LOC118937632 (LOC100136727)


Basic Information

Item Value
gene id LOC118937632
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8018278 ~ 8020571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937008.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcatgtcctcggacgacgccgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgac

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937008.1 True 1848 mRNA 0.68 4 8018278 8020571

Neighbor

gene id symbol gene type direction distance location
LOC118937631 LOC100136727 coding upstream 4136 8006831 ~ 8014142 (+)
LOC118937630 LOC100136727 coding upstream 30157 7985828 ~ 7988121 (+)
LOC100136727 LOC100136727 coding upstream 47091 7969098 ~ 7971187 (+)
LOC110514761 LOC106597212 coding upstream 160829 7830223 ~ 7857449 (+)
plekha8 plekha8 coding upstream 188974 7815250 ~ 7829304 (+)
LOC118937633 LOC100136727 coding downstream 5399 8025970 ~ 8028263 (+)
LOC110516794 LOC100136727 coding downstream 12619 8033190 ~ 8040571 (+)
LOC118936929 LOC100136727 coding downstream 29839 8050410 ~ 8053030 (+)
LOC118936503 LOC106605709 coding downstream 111868 8132439 ~ 8159036 (+)
LOC110514591 LOC106595161 coding downstream 184529 8205100 ~ 8327730 (+)
G110660 NA non-coding upstream 37129 7912531 ~ 7981149 (+)
G110646 NA non-coding upstream 114090 7879860 ~ 7904188 (+)
G110642 NA non-coding upstream 145992 7871758 ~ 7872286 (+)
G110409 NA non-coding upstream 166691 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 178745 7838484 ~ 7839533 (+)
G110673 NA non-coding downstream 35004 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 109190 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 253420 8273991 ~ 8274437 (+)
G110717 NA non-coding downstream 263739 8284310 ~ 8329229 (+)
G110900 NA non-coding downstream 319340 8339911 ~ 8340121 (+)
G110644 NA other upstream 83141 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 311789 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 713633 7282430 ~ 7304709 (+)
G109821 NA other upstream 877299 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 1075195 6941465 ~ 6944043 (+)
G110674 NA other downstream 52795 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1016233 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1200914 9221418 ~ 9229025 (+)
G111453 NA other downstream 1309698 9330269 ~ 9331616 (+)
G111788 NA other downstream 1419738 9440309 ~ 9444041 (+)

Expression


Co-expression Network