LOC110535224 (aif1)


Basic Information

Item Value
gene id LOC110535224
gene name aif1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9221418 ~ 9229025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620097.2
TTTAACTCCCCACACTTCCTCTTCTGTCACAAAATACAGATACATACTTTACACTTTCAGTGTTCATGACACAACGCTCAGCCACCCCTGGTCCCTTTAACTACTCTATGATCCACCAAATAACAGCAGATTGACATGGACAAACATTTGCAAGGAGGGAAAGCATTTGGATTCCTCAAGTCTCAGCAGGATGTGAAACTGAACTCCATCAATGAGGTTTTTCTCACAGATCCTAAATATGCAGAGGAGGAGGACCTCAGCTCAAAACTGGAAATGTTTAAAAACAAATACATGGAATTTGATCTCAATGACCAAGGAGACATTGACATGATGGGGCTGAAGCGCATGTTGGAGAAGCTGGGTGTGGCAAAGACTCACTTGGAGCTGAAAAAGATGATGTCAGATGTGGTTGGCGGTGCTGCACGAGACACGTTCTGTTACACAGACTTTCTCAATATGATGCTAGGGAAGAGGAATTCCATACTCCGACTGATCTTGATGTTTGAGGAGAAAGGGAAAGACCAGGAGCCCAAAGAGAGTGGACCACCGCAACGCAAgactttttcagatctgccctgAAGGCAATTACGTTATGGATCCAATCTGTTCATATAAAAACTGAATGTCAAATGAACTGGGTTATACAGGTTTCATTGTAAGGAATAAAGAAAGGTTTGATTGATCCATAGGCTTGTCCATTTGTTGGTGAAAAACGTGTGTGCAGCTGCAGAACCTCATATCAAGCTCTTGATCGAATATACTTAACAAAGTATATCAATTGTCAGCATTTCTGATAAAATGATAGAATCCCATAACAGATTTGAGTGTTTGTGTAATGGTGAAAAACATCACTCAAAGTGAAAGGTAATCAAAGTGAAAAGTAAAATTATATATTCCATTCCTTTCTATGTAAGTATTGAATAAAAATAGAGTAAACCTT
>TU127103
GACACAACGCTCAGCCACCCCTGGTCCCTTTAACTACTCTATGATCCACCAAATAACAGCAGATTGACATGGACAAACATTTGCAAGGAGGGAAAGCATTTGGATTCCTCAAGTCTCAGCAGGATGTGAAACTGAACTCCATCAATGAGGTTTTTCTCACAGATCCTAAATATGCAGAGGAGGAGGACCTCAGCTCAAAACTGGAAATGTTTAAAAACAAATACATGGAATTTGATCTCAATGACCAAGGAGACATTGACATGATGGGGCTGAAGCGCATGTTGGAGAAGCTGGGTGTGGCAAAGACTCACTTGGAGCTGAAAAAGATGATGTCAGATGTGGTTGGCGGTGCTGCACGAGACACGTTCTGTTACACAGACTTTCTCAATATGATGCTAGGGAAGAGGAATTCCATACTCCGACTGATCTTGATGTTTGAGGAGAAAGGGAAAGACCAGGAGCCCAAAGAGAGTGGACCACCGCAACGCAAGAC

Function

symbol description
aif1 Enables actin filament binding activity. Involved in several processes, including positive regulation of cytokine production; regulation of cell migration; and regulation of smooth muscle cell proliferation. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Colocalizes with actin filament and ruffle membrane. Implicated in type 1 diabetes mellitus. Biomarker of Alzheimer's disease and brain infarction.

NR:

description
allograft inflammatory factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620097.2 False 940 mRNA 0.40 6 9221418 9228300
TU127103 True 493 TUCP 0.46 6 9221485 9229025

Neighbor

gene id symbol gene type direction distance location
LOC118937651 LOC106606075 coding upstream 6278 9212074 ~ 9216058 (+)
LOC110535199 LOC106606086 coding upstream 32215 9175670 ~ 9189203 (+)
LOC110534026 LOC106606081 coding upstream 52467 9149173 ~ 9168951 (+)
LOC110520726 LOC106605921 coding upstream 110646 9106304 ~ 9110772 (+)
LOC110506654 NA coding upstream 115573 9103512 ~ 9105845 (+)
LOC110535231 LOC106573472 coding downstream 11596 9239896 ~ 9243612 (+)
LOC110520731 LOC106605982 coding downstream 81684 9309984 ~ 9315691 (+)
LOC118944051 LOC106573691 coding downstream 126722 9355022 ~ 9358422 (+)
LOC110519250 mroh1 coding downstream 216890 9445190 ~ 9482500 (+)
LOC110506885 LOC106573706 coding downstream 320402 9548702 ~ 9551644 (+)
G111398 NA non-coding upstream 24922 9196245 ~ 9196496 (+)
G111394 NA non-coding upstream 49847 9171328 ~ 9171571 (+)
G111386 NA non-coding upstream 72340 9148856 ~ 9149078 (+)
G111384 NA non-coding upstream 75376 9145710 ~ 9146042 (+)
G111433 NA non-coding downstream 7049 9235349 ~ 9235558 (+)
G111405 NA non-coding downstream 17145 9245445 ~ 9247633 (+)
G111414 NA non-coding downstream 47711 9276011 ~ 9276847 (+)
G111417 NA non-coding downstream 49232 9277532 ~ 9278357 (+)
G111404 NA non-coding downstream 56220 9284520 ~ 9285599 (+)
LOC110518388 LOC106598833 other upstream 183517 8820359 ~ 9072449 (+)
G110674 NA other upstream 1117498 8073366 ~ 8103920 (+)
G110644 NA other upstream 1286281 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1514929 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1916773 7282430 ~ 7304709 (+)
G111453 NA other downstream 101969 9330269 ~ 9331616 (+)
G111788 NA other downstream 212009 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 473740 9701990 ~ 9742723 (+)
LOC118937659 NA other downstream 545903 9773574 ~ 9776807 (+)
G112697 NA other downstream 1583218 10811518 ~ 10826063 (+)

Expression


Co-expression Network