LOC110535231 (LOC106573472)


Basic Information

Item Value
gene id LOC110535231
gene name LOC106573472
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9239896 ~ 9243612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937288.1
atttgatttgaggtccGAGAAGCCGAAGATTCCACCGGAAGTAGTATTCTTGTTTACAGCAGTTAGCTAAAgtgttagctagttagcaaagTAGCAACCGGTAGATATATCTAGCTAACATAAAAGAGGAAGATGAGCAGCTCGGAGGAGGTGTCATGGATCTCCTGGTTCTGTGGCCTGAGGGGGAATGAGTTTTTCTGTGAGGTTGATGAGGACTACATTCAGGACAAGTTTAACCTGACAGGGCTCAATGAGCAGGTGCCTCACTACCGCCAGGCCCTTGACATGATCCTGGACCTGGAGCCAGatgaGGAGTTGGAGGACAACCCCAACCAGAGTGACCTGATAGAGCAGGCAGCAGAGATGCTGTACGGGCTGATCCACGCACGCTACATCCTCACCAACAGAGGCATCGCTCAGATGCTGGATAAGTACCAACAAGGGGACTTTGGCTATTGCCCAAGAGTGTACTGTGAGAATCAACCCATGCTTCCTATTGGTCTGTCAGACATCCCAGGTGAGGCGATGGTGAAGCTGTATTGTCCAAAATGCATGGATGTGTACACCCCCAAGTCCTCCCGGCACCACCACACGGACGGGGCCTACTTCGGGACAGGCTTCCCCCACATGCTATTTATGGTGCACCCAGAGTACCGGCCAAAACGACCTGCCAACCAGTTTGTGCCAAGGCTATATGGCTTCAAGATCCACCCCATGGCTTATCAACTCCAACTCCAGGCTGCCTCCAGCTTCAAGAGTCCTGTGAAGGCTATTCGCTAGAACTTAAACACTGGGAAATATACATTTGGACTTGGTTGGAATGAAAGCAGTGGATTATGTAGCTCAATAAAGGCTTGTTAAAAACACATTATGACAGATACAATACATACATGTAGATCAGGGATGGGAAACTCCAGTCATCGTAGGTCGCAGTATTACCCCATTcatagcaaacacagctgattcaacACGTATTCTAAACTGATGATCATGATTAGTTAATTATtcgagtcaggtgtgttagctgcaGCAAAAAtatgacaccaatcaggccccagaaGGACTGGAGTTGACCATCCCTGATGTAGTTAGATGTCGACGTCCGGACCAGGCCATCATCTGTTACACAGGATGCTCTTTGGTGATTGGCTCCCTCTGTGCTTTAGCCTATCATAACCCTACTGACTACAATCGTGCAACCTTTTTTCAGTTTGGCTCGCTAAGGCAGGGTTTTCCAAACTCAGTCCTGAGGCCCCCCCCCAGGTGCACGTTTAGTTTTttg
>XM_036937290.1
TACAGCAGTTAGCTAAAgtgttagctagttagcaaagTAGCAACCGGTAGATATATCTAGCTAACATAAAAGAGGATGAGCAGCTCGGAGGAGGTGTCATGGATCTCCTGGTTCTGTGGCCTGAGGGGGAATGAGTTTTTCTGTGAGGTTGATGAGGACTACATTCAGGACAAGTTTAACCTGACAGGGCTCAATGAGCAGGTGCCTCACTACCGCCAGGCCCTTGACATGATCCTGGACCTGGAGCCAGatgaGGAGTTGGAGGACAACCCCAACCAGAGTGACCTGATAGAGCAGGCAGCAGAGATGCTGTACGGGCTGATCCACGCACGCTACATCCTCACCAACAGAGGCATCGCTCAGATGCTGGATAAGTACCAACAAGGGGACTTTGGCTATTGCCCAAGAGTGTACTGTGAGAATCAACCCATGCTTCCTATTGGTCTGTCAGACATCCCAGGTGAGGCGATGGTGAAGCTGTATTGTCCAAAATGCATGGATGTGTACACCCCCAAGTCCTCCCGGCACCACCACACGGACGGGGCCTACTTCGGGACAGGCTTCCCCCACATGCTATTTATGGTGCACCCAGAGTACCGGCCAAAACGACCTGCCAACCAGTTTGTGCCAAGGCTATATGGCTTCAAGATCCACCCCATGGCTTATCAACTCCAACTCCAGGCTGCCTCCAGCTTCAAGAGTCCTGTGAAGGCTATTCGCTAGAACTTAAACACTGGGAAATATACATTTGGACTTGGTTGGAATGAAAGCAGTGGATTATGTAGCTCAATAAAGGCTTGTTAAAAACACATTATGACAGATACAATACATACATGTAGATCAGGGATGGGAAACTCCAGTCATCGTAGGTCGCAGTATTACCCCATTcatagcaaacacagctgattcaacACGTATTCTAAACTGATGATCATGATTAGTTAATTATtcgagtcaggtgtgttagctgcaGCAAAAAtatgacaccaatcaggccccagaaGGACTGGAGTTGACCATCCCTGATGTAGTTAGATGTCGACGTCCGGACCAGGCCATCATCTGTTACACAGGATGCTCTTTGGTGATTGGCTCCCTCTGTGCTTTAGCCTATCATAACCCTACTGACTACAATCGTGCAACCTTTTTTCAGTTTGGCTCGCTAAGGCAGGGTTTTCCAAACTCAGTCCTGAGGCCCCCCCCCAGGTGCACGTTTAGTTTTttg

Function

NR:

description
PREDICTED: casein kinase II subunit beta-like

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005956 protein kinase CK2 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03115 CSNK2B; casein kinase II subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937288.1 False 1282 mRNA 0.48 7 9239896 9243612
XM_036937290.1 True 1225 mRNA 0.49 7 9239950 9243612

Neighbor

gene id symbol gene type direction distance location
LOC110535224 aif1 coding upstream 11596 9221418 ~ 9229025 (+)
LOC118937651 LOC106606075 coding upstream 24756 9212074 ~ 9216058 (+)
LOC110535199 LOC106606086 coding upstream 50693 9175670 ~ 9189203 (+)
LOC110534026 LOC106606081 coding upstream 70945 9149173 ~ 9168951 (+)
LOC110520726 LOC106605921 coding upstream 129124 9106304 ~ 9110772 (+)
LOC110520731 LOC106605982 coding downstream 66372 9309984 ~ 9315691 (+)
LOC118944051 LOC106573691 coding downstream 111410 9355022 ~ 9358422 (+)
LOC110519250 mroh1 coding downstream 201578 9445190 ~ 9482500 (+)
LOC110506885 LOC106573706 coding downstream 305090 9548702 ~ 9551644 (+)
LOC110506952 LOC106606100 coding downstream 458378 9701990 ~ 9742723 (+)
G111433 NA non-coding upstream 4338 9235349 ~ 9235558 (+)
G111422 NA non-coding upstream 15991 9218727 ~ 9223905 (+)
G111398 NA non-coding upstream 43400 9196245 ~ 9196496 (+)
G111394 NA non-coding upstream 68325 9171328 ~ 9171571 (+)
G111405 NA non-coding downstream 1833 9245445 ~ 9247633 (+)
G111414 NA non-coding downstream 32399 9276011 ~ 9276847 (+)
G111417 NA non-coding downstream 33920 9277532 ~ 9278357 (+)
G111404 NA non-coding downstream 40908 9284520 ~ 9285599 (+)
G111446 NA non-coding downstream 64614 9308226 ~ 9308477 (+)
LOC110518388 LOC106598833 other upstream 201995 8820359 ~ 9072449 (+)
G110674 NA other upstream 1135976 8073366 ~ 8103920 (+)
G110644 NA other upstream 1304759 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1533407 7615910 ~ 7706660 (+)
G111453 NA other downstream 86657 9330269 ~ 9331616 (+)
G111788 NA other downstream 196697 9440309 ~ 9444041 (+)
LOC118937659 NA other downstream 530591 9773574 ~ 9776807 (+)
G112697 NA other downstream 1567906 10811518 ~ 10826063 (+)

Expression


Co-expression Network