chrnb2 (LOC106575520)


Basic Information

Item Value
gene id chrnb2
gene name LOC106575520
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16133770 ~ 16173038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621651.2
ACACGGACAGCCAATCCCGCTCGGCTCGACTCCTAAGTATACCTGGAGATTTTAGACACGAATAAAAACTATGTCTGTACTGAGAAGACCTGACGGAACCATGACAGGTACCGAGTGAAGAATTAATAAAGGAATATCAAGAAGAGTGCACTGCGTCTGTTCCGGAGGCATTCGAGGATCGAGTGAGCACCTTTTGGTTCGGAgcgcacacatacgcacgcagCTGAGCAGCGATGGGCGCTTGGACGCGGATGCTGTGCCTACTCGCCATTGTGAGAGGCAGCCTGGGGGCGGATACTGAAGAGCGGCTGGTGGAGCACCTGCTAAACCCCGCCCACTATAACAAACTGATCCGCCCAGCGACCAATGGCTCTGAGCTGGTGACGGTTCAGTTGATGGTGTCACTGGCCCAGCTCATCAGTGTGCACGAGAGAGAGCAGGTCATGACCACCAACGTCTGGCTCACACAGGAATGGCAGGACTACCGTCTGACATGGGTCCCTGAGGAGTTTGATGGCATGGAGAAGGTCAGACTGCCTTCCAAACACATCTGGCTGCCCGACGTTGTGCTGTATAACaaTGCTGACGGAATGTACGAGGTCTCCTTCTACTCCAACGCGGTGGTCTCCCATGACGGCAGTATCTTCTGGCTGCCTCCAGCCATCTACAAGTCAGCCTGTAAGATCGAGGTCAAACACTTCCCCTTCGACCAGCAGAACTGCACCATGAGGTTCCGCTCCTGGACCTACGACCGCACAGAGATCGACCTGATCCTGAGGTCCGACGTGGCCAGCATGGACGACTTCACACCCAGCGGAGAGTGGGACATCATCGCCCTGCCGGGGCGCCGCAACGAGAATCCTGCCGACCCCACCTACGTAGACATCACTTATGACTTCATCATCCGCAGGAAACCTCTGTTCTACACCATCAACCTCATCATCCCCTGTGTCCTCATCACCTCTCTGGCTATCTTAGTGTTCTATCTGCCCTCTGACTGTGGAGAGAAGATGACCCTGTGTATCTCTGTCCTGCTGGCCCTCACTGTGTTCCTCCTGCTGATCTCTAAGATCGTCCCCCCCACCTCCCTGGACGTTCCTCTGGTCGGGAAGTACCTGATGTTCACCATGGTCCTGGTGACCTTCTCTATtgtcaccagtgtgtgtgttctcaacGTGCACCACCGctcacccaccacacacaccatgCCCCCCTGGGTCAAGCTGGTGTTCCTCAACAAATTGCCTGCGCTGCTCTTCATGCGCCAGCCCCAGAACAGCTGCGAGCGTCAGAAGCTGCGCCAGCGACGTAGGGGCcaggagcagagggaggggggcagggaTGGGGGCTCTGCCGGGGGGCTGATGGTGGGCCTGGGGCTGGGGGGCGGAGGGGGTGGCACGGATAACAACGACCCCTGTACGTGTTACGTGAACCGGGCATCGGTGAAACAGTTTGTAGGGGAGCTGGGAGGGGGCGCGGGGGGAGGAGGGTCGATGGAGGGGCTGAACGGGCTGAGGGAAGACAGGGAGGGGGGGCAGGGGAACCGGCCCAGGGGGAAACAGGTAGAAGGGGGCCCAGCCCTGACCCAGGCCGTGCTAGGACAAGCCTGCCCTGGGTTGGAGGAGGCTGTCGACGGGGTCCGCTTCATCGCCAACCACATGAAGACTGAAGACGACGACCAGAGCGTGAGCGAGGACTGGAAGTATGTTGCCATGGTGATCGACCGTCTCTTCCTGTGGATCtttataattgtgtgtgtgtccggaACCGTCGGGATGTTCCTCCAGCCACTGTTCCAGAACTACACTGCCAAGACCATCACCAACACCAATGGCTGACCAACCAGGTTCCCAGCAGCATCGATGGACACCGCCCCGACCCAATCAGCACAGCAGGACAGGGGCAGgagggagggacctgcccagcaGGGGAAGTGGGTTTTATTAAGTCTGTGGAACTATATTGGACAGGAGCCACACCTGTTAACCTTTATAGCCTTTCTACTGAACTGTTCTGAACTGAAGAACTAAACTTAACACCAACACCGTATTAAAGATCGTTTTTTTTTCCAGAGGAGGGATAAATGGATGGACAACTCTTCCCTTTTTCCCAGAGGAAGGTGGAGttatgcctctcctctctccctctgagtGATCAGGGAGAGAGGACAATCTCTAAATTGTTTGACATCCTGTAGAACGCTACGCCAGCCAATCAATGCTCTTCATTCCAAGCTGACTGTGCAAGCTTACTGAGAGTATATTGTTGCACCTTAACTGGTACAGAACTTAATGCTTCAGTAACAGAACCTTGATTGGAAACTGTGTCAACCAATCagaaaaatgtaaaggcaattgTTTTTCCAAGCCACTTCTGTTATTAAGCCAActgatagtacagtacagtatattttaCCATAGCATAGCAGTGTACCACAGTATAGCTTTGAATATAATGTTATTGCGATTTCTCTGTGTCTTCCTGAGAGAAAGGTAGGGTGCAGTGGTTTGTTGTATGATTCTCTACGCTTTTAAACAAGAATGTGATATTACCTGTACTACACAGCCTGTGACGTGCACGCTAACACTATATGAGTAGAAGAGACAGATcgtgaaggagagagatgaaagagagagagggatattgACAGAGAGTTAGATGGAATGAGATGAAGTAGTTATAGTGAATCCCAAACCGCCCCCTTGCCAATACCAACTCCCTCCGTTGTCACGTGTTGTTGACGAAGCTCCGAGGGTGACTTCCAGAGAGTGTCGATGGGATCAATAAACCCACCGGGACCAGTCTCTGAATCAGACATAAACACATGCACGTGGTATATAATTAGACACGCCTCTCCGTTTTTTACAATTCAATTGTGCTAACTTCAGACATATAGCAGTGAGTGTTGGGATAGCACTTCGCTCTGAAGCCTGCATCCGTGCTGGCTAGGTCGAAGTGGCTATAGGAGGATCTAATTAGCCCCTACACCCAATTTTCACTCCCTCAGCTTTAGTACACTTGTGCAAATGGCGGAGGCTCGTGTGAACGCGCAAATGGAGTGCCGAGGGGCCAGGCGAATGGGGTGATTTGGGATTCAACCTTAGAGAAAGATAAAGGTGTAGGATGTCTGCATATACAGCTCTATTGGGATAATAGCAGCTTGTGCCATCGGGTACAGTTGCAAGGGGATGAGTTTAGATTCAGTTCCTGGGAAACTGAGATTGGGTTGAGCCAAGATGGAGGAAATTCCCTCCTTTTACAGTTGAGCCATGATTGCACAAAATTGGGTGGTCGAATATAGAACTGACAGATGATATGTATTGTTGGAATAAGGATGTTTTCTCATGAAACATAAGCTATTGTGTGTTATGAATGTTTGCATAAATGTTCATTTCTGTCATCACTGTGATTCTCATTATCAGAGTAAGACAGTGTctcactctgtcctctcttcctttcctccctatctcctcccctccttccccctcctgtcctcccctccttctccctctctcctctcttcctttcctccctctctcctcccctccttccccct

Function

NR:

description
neuronal acetylcholine receptor subunit beta-2-like

GO: NA

KEGG:

id description
K04813 CHRNB2; nicotinic acetylcholine receptor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621651.2 True 3559 mRNA 0.52 6 16133770 16173038

Neighbor

gene id symbol gene type direction distance location
LOC110536089 LOC106575512 coding upstream 16211 16108811 ~ 16117559 (+)
LOC110536080 LOC106575458 coding upstream 97781 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 307240 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 331999 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 346351 15783609 ~ 15787419 (+)
LOC110536177 LOC100286671 coding downstream 117107 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 343043 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 560295 16733333 ~ 16747286 (+)
LOC110520867 LOC106606111 coding downstream 586698 16759736 ~ 16767223 (+)
LOC110536210 LOC106574226 coding downstream 698504 16871542 ~ 16875899 (+)
G116548 NA non-coding upstream 41451 16090562 ~ 16092319 (+)
G116545 LOC106575505 non-coding upstream 51120 16082016 ~ 16082650 (+)
G116543 NA non-coding upstream 53698 16077034 ~ 16080072 (+)
G116542 NA non-coding upstream 58575 16073919 ~ 16075195 (+)
G116541 NA non-coding upstream 62591 16069308 ~ 16071179 (+)
G116560 NA non-coding downstream 223 16173261 ~ 16174047 (+)
G116561 NA non-coding downstream 1081 16174119 ~ 16174776 (+)
G117048 NA non-coding downstream 9852 16182890 ~ 16185784 (+)
G117053 s10ag non-coding downstream 16996 16190034 ~ 16264925 (+)
G117059 NA non-coding downstream 25931 16198969 ~ 16201327 (+)
LOC110535842 LOC106605985 other upstream 682082 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 766981 15355848 ~ 15368210 (+)
G116224 NA other upstream 796068 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 797412 15329572 ~ 15336358 (+)
G116207 NA other upstream 862161 15271202 ~ 15271609 (+)
LOC110536275 s10i other downstream 822672 16995630 ~ 16998361 (+)
G117704 NA other downstream 877094 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 900163 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1226975 17395343 ~ 17421816 (+)

Expression


Co-expression Network