LOC110538325 (lin37)


Basic Information

Item Value
gene id LOC110538325
gene name lin37
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23262463 ~ 23267059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625073.2
AGGAAACGACCTGCGCGCGGAAGAGGAAAGTCTACTGAAACAAATCCGACCACCGCGCTAAccaggcagctagctagctagttgttgGAGGTGTGAACGGGTAGATCATGCATCACGTCAAGATCAAGACTGAGAAGCCAGATGCAGAGGGGAGTGGTGCACGCAGCCGACTAGATGCAGTATTACAGGGGCTGGTAGAGAAGAGTGACAGTGAGAGggagcAAAATGAAGACGAGACAAAGATGGCAGAAGAGTCTCTGAGCAAGGATGTGTCTCCATCTTCTGCTGGGAAGCGGCCATCGTCACGGTTTCCACAGCACCGGAGGAAGAAACGGAAAGAGATGGATGATAGCTTAACAGAGAGCAACCAACATAAACAAAATGCCTACATTATCAAGTTGTTTGACCGCAGTGTGGACCTGGCCCAGTACACCACCAGTACCCCACTTTACCCCATTTGCCGGGCCTGGATGAGGAACAACccggcagtgagagagagagctgcatccCCAAGCCCCCCACACAGCATGGGGGAAGAGGAGGCTGCAGACATGCTCAATGGTAAGGGACAGAATGTGTATCGCCTCCCTCCGCCCACCACCTGTCCTCTCAACCCTTCTGGAGATCCTGTCAATCTGAGGATCCCATCCACAGAAAAGCCTATCGTCAGCAAGTCTACAGATACAGCTCTTGTCTCTGGTCCCCTCATATACAACCACATAGAACGCTGGAAAAAGATAAGGCAAAAATGGAAAGAAGCGTCCAACAAGAATCAGCTGAGGTATAGCGAGAGCATCAAGATCCTGAAAGAGATGAAGGAAATGTACGACCGCTAGCTGGGAATCCTCCAGGTAGTATCCCacagcagagggaggagaaaagaatAGAGCAGGTAGGAGCTACGAGGAAGTCATCTACCCCAGGACGCTGCCCTAGTCCTCTCCCCAAGGAGGCCATTGCGTGTGACAATGTCAAAGGAGCCTCATGGAGCCCATTTTTACCATATACTGCCACATTTAAGGACCCAAAGTCCTCGTTTTGAAAATGTAGCAATACTTTCAGCAAGTTGATGCTTCTGGTGGGCCCAAGTTCACCTGTGACTGGTGTATTGGGACTCTTGGATAATAATTACATTAACGTTTTTTGTCATATTACAGAATATCTGGTAATGCGTTATATAGTCTGTTGTTGATTCCACAATGTGTCATGAAAAGTTTGTAAACAGGTTAAGTAGTGTACAACATTTGTCTAAATTCTGGGATACTCTAAATCAATTCCAATGGTAAATATTTGTTTTAGGATCACCAGTTTCCCAGATAAGCAGTGCCCTTgggaatatttttttttgcatagATGTTCAAAAGAAAAGTCTCACACACGTCTCCCTAATTTAAAGTAAGTAAACTGTGTAAAAAAGTTATAAACTATTGAGCTATTGTAATTTATTTATCGCTATAATAAATCTGCCAGAGTGCTGTTTTTACAGTTGATTGATTACTGAAATGTAATTCAAAGGATTTCTCCACAGCAGTTATTTTGGGAGAGGGTTTTTCCAGAGGGATCTTGTCATCTGCAGGTCAGAAACACAGTCCACATGGATGAAATAAGGTCCAAGATATTGATCACATACAGGCATTAAATGTTCAGTTTGTTT

Function

symbol description
lin37 Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of Myb complex. Orthologous to human LIN37 (lin-37 DREAM MuvB core complex component).

NR:

description
protein lin-37 homolog

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21774 LIN37; protein lin-37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625073.2 True 1654 mRNA 0.45 10 23262463 23267059

Neighbor

gene id symbol gene type direction distance location
LOC110538290 LOC106605611 coding downstream 28695 23224489 ~ 23233768 (-)
LOC110538224 LOC106605608 coding downstream 61507 23176460 ~ 23200956 (-)
LOC110538089 LOC106605603 coding downstream 133453 23119382 ~ 23129010 (-)
LOC110538268 LOC106605601 coding downstream 290923 22968051 ~ 22971540 (-)
si:dkeyp-84f3.5 LOC106605600 coding downstream 297014 22953581 ~ 22965449 (-)
hspb6 hspb6l coding upstream 8979 23276038 ~ 23278785 (-)
LOC110538355 LOC106577931 coding upstream 12057 23279116 ~ 23281851 (-)
igflr1 tm149 coding upstream 107820 23374879 ~ 23379768 (-)
LOC110538238 LOC106605616 coding upstream 126610 23393669 ~ 23405426 (-)
LOC110538371 NA coding upstream 153240 23420299 ~ 23445208 (-)
G123656 NA non-coding downstream 7209 23252782 ~ 23255254 (-)
G123660 NA non-coding downstream 9797 23252405 ~ 23252666 (-)
G123647 LOC106605609 non-coding downstream 25574 23236354 ~ 23236889 (-)
G123429 NA non-coding downstream 91421 23170798 ~ 23171042 (-)
G123821 NA non-coding upstream 287140 23554199 ~ 23554769 (-)
G123822 NA non-coding upstream 287933 23554992 ~ 23555203 (-)
G123859 NA non-coding upstream 357643 23624702 ~ 23624901 (-)
G123863 NA non-coding upstream 359685 23626744 ~ 23627011 (-)
G123882 NA non-coding upstream 384243 23651302 ~ 23651533 (-)
G123435 NA other downstream 63211 23185640 ~ 23199252 (-)
G123308 NA other downstream 256651 23004986 ~ 23005812 (-)
G122972 NA other downstream 884303 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 1104929 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 1234746 22026299 ~ 22027717 (-)
G124840 NA other upstream 636780 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 892108 24144519 ~ 24172836 (-)
G125003 NA other upstream 1002167 24269226 ~ 24270136 (-)
G125043 NA other upstream 1057521 24324580 ~ 24324836 (-)

Expression


Co-expression Network