G122972


Basic Information

Item Value
gene id G122972
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22376153 ~ 22378160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU142062
AATGCCCCTCAAGAAACACATAGTGTTTATTGGTTTTCTACAAATGCATGTTTTTATTTCAAGATATGTCgacattaaaaaaacatttaaaaaaagtattttcCTACTttcactgactttgctgatagctgctttattgtaaaaataaatgtacttCCTACGAcagagatatgtggttgtctcacctagctatctgaagatgaatgcactgattgtaaatcgctctggataagagcgtctgataaATGACTGAAACGTAAAATGTTGACATAAAATAATACTGTATTTCAATCTACACAGACTCCAGGGGGACGTCACCGAGGGTTGGAGGTCTGCTGAAGCTGATCAGAGGCTCCAGGATGAGAGAGTAGGGGCCCACAGCTGCGACGCTCTCCTCACAAAAGCATTTTGAGGACGTTGGGGACACAGAGGGAAACAAGGAAGGGTCTTTACTGTTGGTATAAGATGTGGTAGACCTGGTCCTGCAGGATGCCAGCGTAAGTCATCGCCGCCACGGTGGTGTCACTGATGGCATTtgGCCTTCTCCTTCAGCTTCAGGCCATCGATGCTGTCCAGCCAGCTAGAGGCGGTGCTGATGGATGTGTCGTAGTAGCCCTTGACGACGCTGGTCAGCTTTTCCAGGGTTCCCTGCTCTCCATCAGCCTCAGCAACATCAGCGGCCGGTTCCTCAGGCGTACCCTCCTCAGCTTGCCTAGGCAGACGGAGGCCCTGAGCACCTGGaaggggagggttagggttagagggtcaAAATGGTTGGTTGGTCAGTCTGTCAATATTGCTGCTCGTGGTGCTCTTATCTGGAGTGTTTaacgtttcaaatcaaatcaaattttgttggtcacatacacaaaattagcagatgttattgtgggtgtagcgaaatgctattATGATAAAACAACCTTCTGGGATGCACAGTGAGACTGCATAAATGACAACCTGGAACATCACCAGtatgtcagtcagttagtcagtcagttagtcagtcagggTCTAGACTGTGTACTTACTGAGGCCCAGAAGAGTGACGAGCACAGTGATGACCAGAAGCTTGTTCATGATGTCACTCAGATCTGTGTGCAAAGCAAACATCTTGGTGAGGGTCAGATAAACCATACATCAACTTGTCCACTAGTCAGCATCATTTCCTCTTCCTTTTCAGCTCTGCTCTTAGCCTGATCTCATCTCAGGCTCATCTAATCTCTTCCATTTTATCTCAAACATGTATTTTAACATGTTTCCAATGACTACGGTAAGGCTATTCTGGGGTTGGCAATGTTTTTAATGACAATGAAACTATCATTTTTCTGGGTTTGTATCTCACTATGATGCAGCAGACCAcatacagatgcaggatcttactttgaccagtttctcacagtaggaaaataatcctggAGAAACAGGAAATAatcattataatattattataattAATGGCCATTTTTGTAGTGGGTTGATACATGTTTAGTtagcaaatcaagtctgaaatgttaaattgcaaactttagaagcctttttaaatctTGAAtatactacaagtttgcatttcctgctctGCCCCTGTTGTCCTGTAATAATGATCAAATTaaggtcctacatctgtatagACATGCTCTAATTTATTTAGTTATTCCATTCAGTTGGAACCCCTCTCAATACCCTCTACTTGATCTCTCCCAGGGAGTGTTTTGTCCAACAGTCTGGAGACAGACGTGTAATACCCATCTTACCCACCCAATACCCATCTACAACACCTTATAACAGTGATATTATCATGACTAAGAGGTGTTTTCTTTTTCTCCATGCAGATGTGTGAACCAAAACAGGGTGAACCAAACGAACATGGCTGTACTCACTGTTTCTTCTCTCCGTACTGGGTGA

Function

NR:

description
apolipoprotein CII precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142062 True 1905 TUCP 0.47 2 22376153 22378160

Neighbor

gene id symbol gene type direction distance location
LOC110537898 LOC106605692 coding downstream 60085 22314451 ~ 22316068 (-)
LOC110537882 LOC106577487 coding downstream 122667 22236828 ~ 22253486 (-)
LOC110537877 LOC106577478 coding downstream 141229 22229800 ~ 22234924 (-)
LOC110537752 LOC106577440 coding downstream 177313 22180756 ~ 22198840 (-)
LOC110537803 LOC106577461 coding downstream 200800 22172692 ~ 22175353 (-)
bcam LOC106577531 coding upstream 21497 22399657 ~ 22499146 (-)
rps19 LOC100689943 coding upstream 147024 22525184 ~ 22531056 (-)
cadm4 LOC106577561 coding upstream 172768 22550928 ~ 22749138 (-)
LOC110534479 LOC106578237 coding upstream 377192 22755352 ~ 22774315 (-)
si:ch211-79k12.2 LOC106605590 coding upstream 396348 22774508 ~ 22779710 (-)
G122967 apoa2 non-coding downstream 20081 22354585 ~ 22356072 (-)
G122973 NA non-coding downstream 29525 22342611 ~ 22346628 (-)
G122891 NA non-coding downstream 195754 22179991 ~ 22180399 (-)
G122915 NA non-coding downstream 219882 22150272 ~ 22156271 (-)
G123044 NA non-coding upstream 5986 22384146 ~ 22384796 (-)
G123088 NA non-coding upstream 95294 22473454 ~ 22474204 (-)
G123090 NA non-coding upstream 103710 22481870 ~ 22575322 (-)
G123149 NA non-coding upstream 232590 22610750 ~ 22624269 (-)
LOC110537842 NA other downstream 218619 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 348436 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 520252 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 563721 21796507 ~ 21812432 (-)
G121756 NA other downstream 829116 21490267 ~ 21547037 (-)
G123308 NA other upstream 626826 23004986 ~ 23005812 (-)
G123435 NA other upstream 807480 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 902019 23279116 ~ 23281851 (-)
G124840 NA other upstream 1525679 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1781007 24144519 ~ 24172836 (-)

Expression


Co-expression Network