LOC110537752 (LOC106577440)


Basic Information

Item Value
gene id LOC110537752
gene name LOC106577440
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22180756 ~ 22198840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624116.2
AGAAAGTAACacaaaacaaagagagagagagagagagggaccagcCAGAGTCAGActgagacataaaaaaaaaattccGTTGTGCTGCAAAGAGAGCCTGGGGTCTATATCTGAGACACCATGTTGTAGATGAAATCAGAGAGCTACGCCACTTAGGGGGAGAGATAGTGCCTGGCATGAGAGTGTAAAATGTTGCCCAAGAAGGGGTGGAGAGAACAGGGCAGGAGAGGTGTTGAGATTGTTTAGGAAGGGTGAGTGGTTATTTGTCTGTCTTGTTCTgccctcccttgctctctctctttcagggtTTTCTCTTTACACTTACTCTTTACAAAATGAACTGGAAAGACTGTTCCTAAAAAAATCTTGGCTACTTCTGGAAAACTGACCAAAGAAATTGAGGATTTATGAATTGAGGACTTGATGAATGTAGGcttgaaaacaaacatttttgaGAGATTGTTTGTAAACAGTTTTGAGAGattatttgtaaacatttttgaGAGATTATTTGTAAACAGTTTTGAGAGATTATTTGTAAACAGTTTTGAGAGATTATTTGTTTGCGCTTTTCTGGACAAGACGTTTCCCCTCCACTCTTTCTAAACCTCAGCAGCTGTCTCCATTCCTGTTGGACTATGGTATATTCTGGCGCTCTGCCCCTATCTGGGTTACCTGATTTCATTGGATTATTCTTTGGATTACTGAGGAACACTGGTGAAGATATATTGTATAAAATGTGCTCTTTTCAACCAAAGCTGTCAACCATAAAGATACAATGACAACATTTACTAAGCTGTCCATGCCATACGTGCCAGACATCTAGACCACTCCCTCATTCAACTGTCACAGATAGGGCTGCCAGACACAAACCGCCAGGGTGCACTGAATTGATCCCACTCGGACTAACACACCACAACCAGGAATCCCTCCTCAGGACAATGGCCACAGGAGGGAACGGGCTAGGATCTGACCGGAGCCTGAAATCCACCTCCCAGCCGTCGAGTGCCTCTGACCAGCGGCAGGTGGACAAGGCCCTAAAAAGGCTGGAGAAGCTGCACCAGCTGTGTACCAACCCCAGGCTGGGCCTGAGGAACAGCCCCCCGTACCTCCCCGATGTGGTCTCAGAGACAACCACGCTGCTCACCCAGGTGTGGGAGCCGTACAGGGGTCCTGCAGCTGGGGGGCAGGCCCCCCGGGGGGACGAGGGGGAGTACCTGAGGATCCATGCAAGACACCTGCTGGATAAGACTAACCGGGCCGTGCTGCTGTTTAAAGAGGGGCGTGATAAGATGTTCGAGGAGATGTCCAGCTACAGGAGAAACTTGACCAAGCTGTCCCTGCTCTTCAATCACATGCTCTGGGAGCTAAGGGCCATGTTTCCAGAGGGAAGCTTTCAAGGCAACACCTTTAGGCTGACTAAGACAGAGGCTGGAGAGTTCTGGAGGCGAGAATTTGGAAACAAGTGTATTGTGCAGTGGAGCAGTTTTAAGCAGCATCTCCGTAGGGTCCATGGCTTTGAAGAGGGGATGGAGTCCATGGCTCTAAAGTCCACTGTAGATCTCACCTGTAATGACCACATCTCAGTGTTCGAGTTTGACATCTTCACCAGGCTATTCCAGCCCTGGAGGTCTCTTCTGAGGAACTGGAACCAGTTGGCAGTGACCCACCCCGGCTACATGGCCTTCCTCACCTACGACCAGGTCAAAGCCCGCCTCCAAAACTACCTGCACCAGCCCGGGAGCTACATCTTCCGTCTGAGCTGCACTCGGATGGGCCAGTGGGCCATTGGTCATGTGACTGGTGATGGCGGCATCGTACAGACGATCCCCCAGAATACACCTCTCTACCAGGCCCTCATCCAGGGCTTCAGGGAGGGCTGCTATCTTTACCCTGACGGACGTGATGTGAACCCAGACCTCACCAGTCTGTGTGAACCAGCACAGAGAAGCAGGGTCAAAGTCACAGAGGACGAGTATGAGATGTACTGTGAGATGGGTAGTGCCTTCCAGCTGTGTAAGATctgtacagagagagacaaggacaCACGCATCCAGCCCTGCGGACACCTGCTGTGCCAACCCTGCCTCACAGGATGGCAGAAGTCGGATGGACACACCTGCCCATACTGTCGCTGTGACATCAGAGGGACAGAGTCCATCCTGGTGGAGCCTTACCTGTCTGTCagcgaggaagaggaagatgaagatgacCTGGAGGATGTACAGCTAGTCATGAAAAACCTGGCCTATATGAAGAggaTGTCGTCTGAAGAGTACCAGTTCCCCAGCTCTCGCCTcgttccacccctccctcccaaaCACAGCACCTTCTCCCACTGCCCTTCCCCACAAGCCCCCTTACGGCCCTCCGATATACTGGCCGAAAACTCCCACTCTAACTCGAGTTCTGCTCACAGTGACACCCCCTCAGACAGAGCGCTCACACACACCACTGCCAGCACTAACAGTGAGGATTCTGTCTCAAAGCCAAACCTCCCCTCCTGTTCCGTCTCCTCCCAGTCCTGTGGAGAGGGTGGAGCAGCCTGGGAAGGGGCTTCAGATTCAGTGAAACAGAAGAAGAGGTATAAAGAAAGGAGTGAAAGGATGTCAGAGCTCGGGTACAgccagagagagcgggagagaaccATGTCCTCCTGACGCTGGGAGAAAAGATAAGCACAACATCTCTGACTCAAGAATGGATGGATAATAGGAATAAGAAAGGTTGATTTCCACTGTTCCTGATAAACAGCCATTGTTAATCTTATGTACCTTATGAATATGTATCTTATGTATGCCTTAATATGGAGGGAGAATGCCCTGTTGATAAACTAATAATGACATCAAAGTGAATGGAGAAGGACAGACTGATGGAGCAACTCACTGATGCCCTCTGCTGCACAGCAAACAGAGTAAGCTGCTGCACAGCAAACAGAGTAAGCTGCTGCACAGTTCCAAAAACAAGTAAAATTATTTCATTGCTTGATGTGTGTATGTAGGGCATTGAAAATATGCTACCTCCTAATTTACCCCATACTTAAAACATATTGTCCAGGATGTATGACTAGTACGGTATATAGCCTGCATACTATAGTTGTATGTTAATATGATCAAACATGAAACCCAAATAAAACTTTTGCACCTCCATCATACCAATACAAATGCACATAGTAATGAAAGTGTAGTTCctaagacagacagacggaaGATAGTGTAACTTCAGGCTTTATTGTGTTTGACATGCTTACACTCTGTGCTGATTCCACTTTAGTATcaaactaggaggagagagagagaaagagagagagaggaagagtttggaggagtggaggtctgagagacagggaggaagagttTGGAGGAGTGGAGGTCTGAGAGACAAGGAGGAAAGCAGCTAGTGTTGTTACATGTTGGCCTTCATGGTCTCATCGATCCAGGGGAGGAACT
>TU141966
TAGTTCctaagacagacagacggaaGATAGTGTAACTTCAGGCTTTATTGTGTTTGACATGCTTACACTCTGTGCTGATTCCACTTTAGTATcaaactaggaggagagagagagaaagagagagagaggaagagtttggaggagtggaggtctgagagacagggaggaagagttTGGAGGAGTGGAGGTCTGAGAGACAAGGAGGAAAGCAGCTAGTGTTGTTACATGTTGGCCTTCATGGTCTCATCGATCCAGGGGAGGAACTCACACACTTTGACATAGACTCCGGGGTATCCGGGCACGGCACAGCCCTGACCCCAGGACACCAGGCCATGAACCTCACCCAAACACACTAGACCACTTCCAGAGtccccctgagagagagagaaaaagagaaggagagagagagagagagagagagtgtgagagagagagagtgtgtgagagagagtgtgagagagagtgtgagagaggtaAGGAATCATTTCAAGGTGATCCTAATAtgtaccactgtgttttataaatgaCTAAACGGTCTCATCAAAAAGGTGTCATATACTGTACGTACGTTGCATGCGTCTCTGCCTCCGTCCATGTATCCGGCACACACCATCCTGCGGGTGAGCATGCCAGGGTAGGCCATCTCACACTTCTCATCCTCCAGTATGGGCACATCCAGACACTGCAGACGGGCGGGCATGTTTACTcctctccggtGGCGATGTTGCCCCAGCCAGAGACAGAGCAGGGGAGGCCTGCGTATGGGCAGCTGGTGGGCAGCGGGATGGGCTTTACGTAATCAGTGATTTCCACAGGGTGGAACAGCTTGATCAGCATCATGTCATAGTCCAGCGTCTGGTAGTCATagctacagagagaagagagagaggccaaGGGATTTTTATTGAATCATGTAATGTGATAAAACTCCATTCAGCCTCGGTTCGGTAGTTAAAATGGCTTCCCTAAAGTGATGTGTAAGGGGTAAGTGTGGGTGTAGCTTGCCTGGGATGCCAGATTATGTTTTGAGTCTTCATGAGCTGCTCAGTTCCCTCAAACACACGCAGGTTGTGCTCTCCAAGCATGATCTGCATAGCGTAGGGGCTGAGAGAGAAGGACGAAGGAGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624116.2 False 3449 mRNA 0.49 11 22181845 22198840
TU141966 True 1129 lncRNA 0.50 2 22180756 22182109

Neighbor

gene id symbol gene type direction distance location
LOC110537803 LOC106577461 coding downstream 6492 22172692 ~ 22175353 (-)
LOC110537842 NA coding downstream 54297 22120579 ~ 22157534 (-)
LOC110537847 mrpl17 coding downstream 63762 22114700 ~ 22118083 (-)
LOC110537643 LOC106605567 coding downstream 460210 21713005 ~ 21721635 (-)
cnfn LOC106605555 coding downstream 534359 21645294 ~ 21647486 (-)
LOC110537877 LOC106577478 coding upstream 30960 22229800 ~ 22234924 (-)
LOC110537882 LOC106577487 coding upstream 37988 22236828 ~ 22253486 (-)
LOC110537898 LOC106605692 coding upstream 115611 22314451 ~ 22316068 (-)
bcam LOC106577531 coding upstream 200817 22399657 ~ 22499146 (-)
rps19 LOC100689943 coding upstream 326344 22525184 ~ 22531056 (-)
G122891 NA non-coding downstream 1446 22179991 ~ 22180399 (-)
G122915 NA non-coding downstream 25574 22150272 ~ 22156271 (-)
G122914 NA non-coding downstream 25910 22149927 ~ 22155935 (-)
G122973 NA non-coding upstream 143771 22342611 ~ 22346628 (-)
G122967 apoa2 non-coding upstream 155745 22354585 ~ 22356072 (-)
G123044 NA non-coding upstream 185306 22384146 ~ 22384796 (-)
G123088 NA non-coding upstream 274614 22473454 ~ 22474204 (-)
G123090 NA non-coding upstream 283030 22481870 ~ 22575322 (-)
G122829 LOC106605673 other downstream 154128 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 325944 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 369413 21796507 ~ 21812432 (-)
G121756 NA other downstream 634808 21490267 ~ 21547037 (-)
G122972 NA other upstream 177313 22376153 ~ 22378160 (-)
G123308 NA other upstream 806146 23004986 ~ 23005812 (-)
G123435 NA other upstream 986800 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 1081339 23279116 ~ 23281851 (-)
G124840 NA other upstream 1704999 23903839 ~ 23904677 (-)

Expression


Co-expression Network