LOC110537877 (LOC106577478)


Basic Information

Item Value
gene id LOC110537877
gene name LOC106577478
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22229800 ~ 22234924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942350.1
CGCTAACACATTTGAAGCATGAAACGGACAACtgtaaaacatgtatttattacaGAAAGTTGATGGTGTTACAGTTTTGTCTGAGGCATGTGCAGTGCTGCAATTGTTATCGCTAGGAACATtagcaagctaatgttagctCAGTCAGTGACTGTCAGTCAAGTCGACCAAATCTCAGAGCATTCCGAATttttctCATGGGCAGTGTGTTGGCTGCCAGCTCCCCCACTCCCCCCCCTGCCCCAGGCAGTGGTGTTGTCCAGGGGGCCCCTGGGTTGGTGTCAGTCCCCCCAGGGTTCTCCATGCCCTCCgtccctcccccctctgtccccgGACAGCCAGCAGGTGAAACGGGGAGCCCCCTCCCCAACCCTGGTACTTATGAGGAGTGTCATCGCAAGTGCAAAGAGGTGTTCCCCATCCAGATGGAAGGAGTGCGACTGGTGGTCAACAAGGGCCTGAGTAATCACTTCCAGGTCAGTCATACAGTTACTCTCAGCACCTTGGCTGAATCTGGCTACCGGTTTGGTGCCACCTACGTGGGCACTCAACAGACAGGACCTGCTGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACACCGGTAGTCTGAACGCCCAGGTTATCCACCAGCTCACCAGCGCCGTGCGCTCCAAAATAGCCATCCAGACTCAGCAGCACAAGTTTGTGAACTGGCAGTGTGACCTGGAGTACCGCGGTGACGACTTCACTTCTGCTGTTACCCTTGGCAACCCAGACGTCCTCCTCGGCTCTGgTATTATCGTGGCTCACTACCTCCAGTCCATCAGTCCAGCCCTGGCGTTGGGAGGAGAGCTGGTTTACCACCGGAGgcctggagaggagggagcagtcACCTCCCTAATGGGCAGATACACAGGCAATAATTATGTTGCCACATTGACTCTAGGGGGTGCCGGGGCTCATGCAACATACTACCACAGAGCCAATGACCAGCTGCAGCTGGGGGTGGAGTTTGAGGGCAGCATGCGGACGCAGGAGACCGCAGTATCGTTTGGGTATCAGCTGGACCTCCCTAAAGCCAACCTGCTCTTTAAAGGTTCGGTAGACAGTAACTGGGTGGTGGGGGCGGTCCTGGAGAAGAAGCTGctgcccctgcctctctccttggCCCTGGGAGCCTTCCTTAACCAAAAGAAGAACACGTTCCAGTGTGGCTTCAACGTCACCGTTGGCTAGACCTCCAGCCGCCTCCGACACACTGGGTCGTGCTTGGACCAGCACTTGTCATGTATGTATCTACTGGATTCAGAGACTCTCCTATACTGTGAATTGTGGGGCAGAGAGTTACTCTATACCAAGGAGCCAGGCCTACATATTGTAGCACAAGTGTATTTCCTTACAATCGATACATTCTTTAGGAAAGGGAAAAAGCTATATTTTTACCAAACTTCAGAAGCATTTTGAATACATTATCTTGGTCCTAGAGTCATGAAATGTTCAGAGTACACTGAGTGCAGTTACTGCTTTTGATACATGTAACAAACATTGGCAGAAATGGAGTTGAGGTTTTCAACAGACCGTGATGAAATGTATTTAGAATCATAAATAAACTACTTTTGTATTTTGGG
>XM_021624323.2
TATGCTGGCCAATGGTAGTTGATTTTGTAGATACACTACCCAATCCATGGGGTTTTTGGGTGCGGTGGGCGGGCCTAAAATGTGCACCGGAAGCTTGTGGAACTTTGCCGGTGCGTAGCTTGAATTACCGCTGAACACGCACGAACAGTCAACCATGGGCAGTGTGTTGGCTGCCAGCTCCCCCACTCCCCCCCCTGCCCCAGGCAGTGGTGTTGTCCAGGGGGCCCCTGGGTTGGTGTCAGTCCCCCCAGGGTTCTCCATGCCCTCCgtccctcccccctctgtccccgGACAGCCAGCAGGTGAAACGGGGAGCCCCCTCCCCAACCCTGGTACTTATGAGGAGTGTCATCGCAAGTGCAAAGAGGTGTTCCCCATCCAGATGGAAGGAGTGCGACTGGTGGTCAACAAGGGCCTGAGTAATCACTTCCAGGTCAGTCATACAGTTACTCTCAGCACCTTGGCTGAATCTGGCTACCGGTTTGGTGCCACCTACGTGGGCACTCAACAGACAGGACCTGCTGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACACCGGTAGTCTGAACGCCCAGGTTATCCACCAGCTCACCAGCGCCGTGCGCTCCAAAATAGCCATCCAGACTCAGCAGCACAAGTTTGTGAACTGGCAGTGTGACCTGGAGTACCGCGGTGACGACTTCACTTCTGCTGTTACCCTTGGCAACCCAGACGTCCTCCTCGGCTCTGgTATTATCGTGGCTCACTACCTCCAGTCCATCAGTCCAGCCCTGGCGTTGGGAGGAGAGCTGGTTTACCACCGGAGgcctggagaggagggagcagtcACCTCCCTAATGGGCAGATACACAGGCAATAATTATGTTGCCACATTGACTCTAGGGGGTGCCGGGGCTCATGCAACATACTACCACAGAGCCAATGACCAGCTGCAGCTGGGGGTGGAGTTTGAGGGCAGCATGCGGACGCAGGAGACCGCAGTATCGTTTGGGTATCAGCTGGACCTCCCTAAAGCCAACCTGCTCTTTAAAGGTTCGGTAGACAGTAACTGGGTGGTGGGGGCGGTCCTGGAGAAGAAGCTGctgcccctgcctctctccttggCCCTGGGAGCCTTCCTTAACCAAAAGAAGAACACGTTCCAGTGTGGCTTCAACGTCACCGTTGGCTAGACCTCCAGCCGCCTCCGACACACTGGGTCGTGCTTGGACCAGCACTTGTCATGTATGTATCTACTGGATTCAGAGACTCTCCTATACTGTGAATTGTGGGGCAGAGAGTTACTCTATACCAAGGAGCCAGGCCTACATATTGTAGCACAAGTGTATTTCCTTACAATCGATACATTCTTTAGGAAAGGGAAAAAGCTATATTTTTACCAAACTTCAGAAGCATTTTGAATACATTATCTTGGTCCTAGAGTCATGAAATGTTCAGAGTACACTGAGTGCAGTTACTGCTTTTGATACATGTAACAAACATTGGCAGAAATGGAGTTGAGGTTTTCAACAGACCGTGATGAAATGTATTTAGAATCATAAATAAACTACTTTTGTATTTTGGG

Function

NR:

description
mitochondrial import receptor subunit TOM40 homolog

GO: NA

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942350.1 False 1612 mRNA 0.52 10 22229800 22234761
XM_021624323.2 True 1569 mRNA 0.53 10 22229800 22234924

Neighbor

gene id symbol gene type direction distance location
LOC110537752 LOC106577440 coding downstream 30960 22180756 ~ 22198840 (-)
LOC110537803 LOC106577461 coding downstream 54447 22172692 ~ 22175353 (-)
LOC110537842 NA coding downstream 102252 22120579 ~ 22157534 (-)
LOC110537847 mrpl17 coding downstream 111717 22114700 ~ 22118083 (-)
LOC110537643 LOC106605567 coding downstream 508165 21713005 ~ 21721635 (-)
LOC110537882 LOC106577487 coding upstream 1904 22236828 ~ 22253486 (-)
LOC110537898 LOC106605692 coding upstream 79527 22314451 ~ 22316068 (-)
bcam LOC106577531 coding upstream 164733 22399657 ~ 22499146 (-)
rps19 LOC100689943 coding upstream 290260 22525184 ~ 22531056 (-)
cadm4 LOC106577561 coding upstream 316004 22550928 ~ 22749138 (-)
G122891 NA non-coding downstream 49401 22179991 ~ 22180399 (-)
G122915 NA non-coding downstream 73529 22150272 ~ 22156271 (-)
G122914 NA non-coding downstream 73865 22149927 ~ 22155935 (-)
G122973 NA non-coding upstream 107687 22342611 ~ 22346628 (-)
G122967 apoa2 non-coding upstream 119661 22354585 ~ 22356072 (-)
G123044 NA non-coding upstream 149222 22384146 ~ 22384796 (-)
G123088 NA non-coding upstream 238530 22473454 ~ 22474204 (-)
G123090 NA non-coding upstream 246946 22481870 ~ 22575322 (-)
G122829 LOC106605673 other downstream 202083 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 373899 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 417368 21796507 ~ 21812432 (-)
G121756 NA other downstream 682763 21490267 ~ 21547037 (-)
G122972 NA other upstream 141229 22376153 ~ 22378160 (-)
G123308 NA other upstream 770062 23004986 ~ 23005812 (-)
G123435 NA other upstream 950716 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 1045255 23279116 ~ 23281851 (-)
G124840 NA other upstream 1668915 23903839 ~ 23904677 (-)

Expression


Co-expression Network