LOC110538767 (LOC106605667)


Basic Information

Item Value
gene id LOC110538767
gene name LOC106605667
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24249862 ~ 24253101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625736.2
CATTCCCATGTCAACAATACATTACATCCAGCCAGACCCTACATTCTCTTGGATCTGTTAGGAACACTTGTACTTGGGTCTGTTATTTCTTCactgtcttcttcttctctgctcAGGAGCAGTGGGTTTAGAAGGAGCTGACAGAAGGACCGCTACCATGGCTGATGGAAAGGGATTCACCTGTCTTATGGTCATTCTCATCCTGGGGAATATATTTGGAGCTGCAGCAGGTCTTGCCCTTTGCGCTCTGGCCATCTGGGTTGCAGTAGATCAATTCAAGCTCTACCCTATATCTGGTGTGTCGGGGAAAGATGACATCTTTGCCGGGGCCTGGATTGCCATTTTCACAGGCTTTGCCTTCTTCTGCATGTGCGTCTTTGGTATCTTGGCTGCTGCGATGAAGAGCCGTGCCTTAATGCTAACATATCTGATCCTGATGTTGATCATCTACATATTTGAGTGTGCCTCGTGTATCACTGCAGTCACCCACAGAGACTATCTGGTTGGAAACAGTAATCTGGTGAAGAAGCAGATGCTGAAGTACTATGCAGCCGATGGTGACTCTGGCAGTCGGATCACACTGACATGGAACAAAGTGATGAAAGAGGTGGAGTGTTGTGGAACGGATGGCCCAGTGGACTGGATAGAGTACAACTCCACCTTCAGGGAGAAGTTTGGTACAGACTACCCCTGGCCCACCCACTGCTGCAAAAGGAAGAACAACTACGATGTGGTGAATGTGGAGGCCTGCAAGAATGGCCAGAACACCACCATGTTCACTAAGGGCTGCTTCAACCACATTGAGTCTGTGTTCAGTCGATATACATGGGCTATCAGCTGGTATGGTTTCGCTGTGCTAATGTTTATGTTCTTGCTGTTGATCCTGGCCATGGTGTACTACCTGATGCTGTGAGAAGTCTGGAGGTGATGTCTCTAACCCATGTTTTTGACTTTCTGCTGAAGCCACACCAACCCTCACTTCagcaactacagtgccttgcaaaagtattcacccccttggcattattttgttgcattacaacctgtaatttaatttaaatggatttttatttggatttcatgtaatggacatacacaatatagtccaaattggtgaagggaaatttaaaaaattacttgtttaaaaaaatgtaaaagaatttaaaacggaaaagtggtgcgtgcatatataTTCAACCTCTTTGCTATGAAgcacctaaataagatctggtgcaaccaattaccttcataaGTGACATAATTAGTAACATAAAGTCCACctatgtgcaatctaagtgtcacatgatcggtcacatgatctcagtatatatacacctgttctgaaaggccccagagtctgcaacaccactaagtgaaaccaccaagcaagcggcactatgaagatcaa

Function

NR:

description
PREDICTED: uroplakin-1a-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625736.2 True 1408 mRNA 0.44 7 24249862 24253101

Neighbor

gene id symbol gene type direction distance location
LOC110538717 LOC106578554 coding downstream 65690 24178523 ~ 24184172 (-)
LOC110538705 LOC106577653 coding downstream 77026 24144519 ~ 24172836 (-)
LOC118938710 LOC106605635 coding downstream 110194 24138846 ~ 24139668 (-)
LOC110538681 LOC106605635 coding downstream 118259 24124948 ~ 24131603 (-)
LOC110533695 NA coding downstream 158398 24084443 ~ 24091464 (-)
LOC110538859 LOC106578507 coding upstream 227164 24480265 ~ 24492482 (-)
LOC100301652 LOC100301652 coding upstream 250705 24503806 ~ 24504593 (-)
LOC110538887 LOC106605647 coding upstream 278323 24531424 ~ 24540898 (-)
LOC110538978 LOC106605653 coding upstream 331292 24584393 ~ 24601385 (-)
LOC110538828 grik2 coding upstream 609805 24862906 ~ 25110583 (-)
G124943 NA non-coding downstream 11351 24237651 ~ 24238511 (-)
G124944 NA non-coding downstream 72727 24176850 ~ 24177135 (-)
G124958 NA non-coding downstream 76423 24173226 ~ 24173439 (-)
G124947 NA non-coding downstream 120175 24129417 ~ 24129687 (-)
G124994 NA non-coding upstream 1555 24254656 ~ 24254894 (-)
G124995 NA non-coding upstream 2639 24255740 ~ 24256041 (-)
G125010 NA non-coding upstream 25158 24278259 ~ 24278499 (-)
G125032 NA non-coding upstream 55277 24308378 ~ 24308833 (-)
G125041 NA non-coding upstream 69863 24322964 ~ 24323238 (-)
G124840 NA other downstream 345185 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 968064 23279116 ~ 23281851 (-)
G123435 NA other downstream 1050610 23185640 ~ 23199252 (-)
G123308 NA other downstream 1244050 23004986 ~ 23005812 (-)
G125003 NA other upstream 16125 24269226 ~ 24270136 (-)
G125043 NA other upstream 71479 24324580 ~ 24324836 (-)
G125305 NA other upstream 522119 24775220 ~ 24776627 (-)
G127083 NA other upstream 2308513 26561614 ~ 26562127 (-)

Expression


Co-expression Network