LOC110538681 (LOC106605635)


Basic Information

Item Value
gene id LOC110538681
gene name LOC106605635
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24124948 ~ 24131603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625650.2
CCCAGTCTTCAATAAGAAGAATTTGCCCGTCCACTGCTCGTCAGATAACACACAGCTGTTGGTACTACGTTCTTGAATCAAAGATTGTATTGATTACATATTTTCTGGAATACAACTCTCTTTCCTACAGGGCTAAAGCCACTATGCACTGTCAATATATTCTACAGTTATCTCTGTTAACTCTACTCTCCCTGCCAGGCACACTGGCACAGACCTGGTCTGTCTGGTACCGTGACAGGGACAGGATTACTGTTATCTGTGCATCAAAAGGCTCATCAGTGGTATTTGACTGTATATACAGCTACCCAGCTAACCAGAGAGTTGGAAGAAAGATATGGTTCACTCCGAGAGGCGATACAAAACAAGATGGCTCACAGCTAGGAGATGGAGTGTTTAACACATCTGGACTGACTAATAAATCAAGATACAGTGGAAGAACAGAGTTTTATGACCAAGACAATAACTGCACACTGAAACTCAACAATGTGACTGAAGATGACAGTGGCAGATTCTTCTTCAGATTTGAGGCAAATACAAGTAATCAGCCCCCTCAGGGATTTACAGGATCGTGGGGTGTGGACCTGACAATACCAGTCTTATCCCTAAAGTTAAATGAAAATGGCCCCGTTAAGGAGCGAGACCACGTCACCTTGGCCTGCACCTCCACCTGTAACCCTCCTCAAATGGAGTTCCTCTGGTTTAAAGATGGCCGCCCACTTCCTGGTGTCTCTGGTGTCCATGGTGGGCAGTATCGCCTAGGTCCACTTTCCCCTAATGACACTGGGAGCTACTCCTGTGGTCTGGGGAAAGGCACATCTACACCAATACTGCTGGATGTGAGATATGCTCCAAGGAACGTTTCTGTTAAGGTCAGCCCGAGCCACGAGGTAGTGGAAGGCAGTCGTCTGACTCTGACCTGCAGCAATAACGCCAACCCTGCAGCAGAGACCTACACCTGGTTTCAGAGGACAGGAACGCTAACTTCACTAAGATTAGGGATGGGGAAAGAACACACCTTCCATGAAATAGATTCTGATGACAGTGGACTGTACTTCTGTATGGCCCAGAATGCCGTTGGATCACAGAACTCTACCGAACAGGAGGTGAAAGTTATAGAATCAGCCCATTTAATGGTGGTCCTGGCAGCATTTGGGGCTCTCTTCCTTGTCACAGCAGTGATTGTGGTGCTCTTCATTTACATAAAAAGATGGAAGTTGAATACGGCCGAGAAGAAGCTTCCAACCAAACCAGTCCCCCAGTTACAGAAAGCAACCTTGTCTAGACCAGAGGACATCTATGAAAACATGAAATGGTCAGCCAAGCCGATCACTGATCCTGATGACATGAACTACGCAGAGCTCAATTTCAGGCCTGCTCCTTCACCCAGGATGCAGCGGAAATAACAATGCAGAAGATGACGATGCAGTTGTCTACAGACAACTGCAAACACACTGAGGTGGTCAGAGAACTTTGATATCTAGACCTCAAGGCCTACAATATGGTAAACTCAAGAAAAGTGAATGAAAAAAAGTATGTTAAGTGACATAGCAAAATACAagctgttatactgtatgtgtatgtacaaACAATGTACAGTGTACAATATACAAAATAAACAGTAAAAAAGTGGCTAATTATACAAATACAAACATAAAATGATTACATGAGCACACAGGGTATGCCATTTAACAACAGATTATTAAAAAATAAGCATATCATATTGCTCTGTAATATATAAGAGCTCTGTATATTTCTCATGATTACAACACTTGAAGAGATGTAATTTTGACACGTCATTATTTCTTAATGAGATTATGCTGTATATTCAATGTGGAAACATGTTAATATGTTAGGATAAACTGTCCTTATCAAATAATGATATGTCACTTACAGATTGTTTGCAGATTAAAGTGAATATAA
>XM_021625658.2
TTGgattgcaaatccaatcagtttttcaCGTTTATTCAATGTCATaacatagatttttggggggttgaaatgacatggaacaatgttgattcaaccagtttttgcccagtgggtgtTATTGCAAAATGGTATTGTGGTATTGTTGtgacttttttctctctctaaaaAGCAGAAGTATGTGACAGTAATTTCAGCGAAATAGATGTTTTATGATGACATCAGTATTTCTCCACAACCACCCAGTCTTCAATAAGAAGAATTTGCCCGTCCACTGCTCGTCAGATAACACACAGCTGTTGGTACTACGTTCTTGAATCAAAGATTGTATTGATTACATATTTTCTGGAATACAACTCTCTTTCCTACAGGGCTAAAGCCACTATGCACTGTCAATATATTCTACAGTTATCTCTGTTAACTCTACTCTCCCTGCCAGGCACACTGGCACAGACCTGGTCTGTCTGGTACCGTGACAGGGACAGGATTACTGTTATCTGTGCATCAAAAGGCTCATCAGTGGTATTTGACTGTATATACAGCTACCCAGCTAACCAGAGAGTTGGAAGAAAGATATGGTTCACTCCGAGAGGCGATACAAAACAAGATGGCTCACAGCTAGGAGATGGAGTGTTTAACACATCTGGACTGACTAATAAATCAAGATACAGTGGAAGAACAGAGTTTTATGACCAAGACAATAACTGCACACTGAAACTCAACAATGTGACTGAAGATGACAGTGGCAGATTCTTCTTCAGATTTGAGGCAAATACAAGTAATCAGCCCCCTCAGGGATTTACAGGATCGTGGGGTGTGGACCTGACAATACCAGTCTTATCCCTAAAGTTAAATGAAAATGGCCCCGTTAAGGAGCGAGACCACGTCACCTTGGCCTGCACCTCCACCTGTAACCCTCCTCAAATGGAGTTCCTCTGGTTTAAAGATGGCCGCCCACTTCCTGGTGTCTCTGGTGTCCATGGTGGGCAGTATCGCCTAGGTCCACTTTCCCCTAATGACACTGGGAGCTACTCCTGTGGTCTGGGGAAAGGCACATCTACACCAATACTGCTGGATGTGAGATATGCTCCAAGGAACGTTTCTGTTAAGGTCAGCCCGAGCCACGAGGTAGTGGAAGGCAGTCGTCTGACTCTGACCTGCAGCAATAACGCCAACCCTGCAGCAGAGACCTACACCTGGTTTCAGAGGACAGGAACGCTAACTTCACTAAGATTAGGGATGGGGAAAGAACACACCTTCCATGAAATAGATTCTGATGACAGTGGACTGTACTTCTGTATGGCCCAGAATGCCGTTGGATCACAGAACTCTACCGAACAGGAGGTGAAAGTTATAGAATCAGCCCATTTAATGGTGGTCCTGGCAGCATTTGGGGCTCTCTTCCTTGTCACAGCAGTGATTGTGGTGCTCTTCATTTACATAAAAAGATGGAAGTTGAATACGGCCGAGAAGAAGCTTCCAACCAAACCAGTCCCCCAGAAAGCAACCTTGTCTAGACCAGAGGACATCTATGAAAACATGAAATGGTCAGCCAAGCCGATCACTGATCCTGATGACATGAACTACGCAGAGCTCAATTTCAGGCCTGCTCCTTCACCCAGGATGCAGCGGAAATAACAATGCAGAAGATGACGATGCAGTTGTCTACAGACAACTGCAAACACACTGAGGTGGTCAGAGAACTTTGATATCTAGACCTCAAGGCCTACAATATGGTAAACTCAAGAAAAGTGAATGAAAAAAAGTATGTTAAGTGACATAGCAAAATACAagctgttatactgtatgtgtatgtacaaACAATGTACAGTGTACAATATACAAAATAAACAGTAAAAAAGTGGCTAATTATACAAATACAAACATAAAATGATTACATGAGCACACAGGGTATGCCATTTAACAACAGATTATTAAAAAATAAGCATATCATATTGCTCTGTAATATATAAGAGCTCTGTATATTTCTCATGATTACAACACTTGAAGAGATGTAATTTTGACACGTCATTATTTCTTAATGAGATTATGCTGTATATTCAATGTGGAAACATGTTAATATGTTAGGATAAACTGTCCTTATCAAATAATGATATGTCACTTACAGATTGTTTGCAGATTAAAGTGAATATAA
>XM_021625667.2
TTGgattgcaaatccaatcagtttttcaCGTTTATTCAATGTCATaacatagatttttggggggttgaaatgacatggaacaatgttgattcaaccagtttttgcccagtgggtgtTATTGCAAAATGGTATTGTGGTATTGTTGtgacttttttctctctctaaaaAGCAGAAGTATGTGACAGTAATTTCAGCGAAATAGATGTTTTATGATGACATCAGTATTTCTCCACAACCACCCAGTCTTCAATAAGAAGAATTTGCCCGTCCACTGCTCGTCAGATAACACACAGCTGTTGGTACTACGTTCTTGAATCAAAGATTGTATTGATTACATATTTTCTGGAATACAACTCTCTTTCCTACAGGGCTAAAGCCACTATGCACTGTCAATATATTCTACAGTTATCTCTGTTAACTCTACTCTCCCTGCCAGGCACACTGGCACAGACCTGGTCTGTCTGGTACCGTGACAGGGACAGGATTACTGTTATCTGTGCATCAAAAGGCTCATCAGTGGTATTTGACTGTATATACAGCTACCCAGCTAACCAGAGAGTTGGAAGAAAGATATGGTTCACTCCGAGAGGCGATACAAAACAAGATGGCTCACAGCTAGGAGATGGAGTGTTTAACACATCTGGACTGACTAATAAATCAAGATACAGTGGAAGAACAGAGTTTTATGACCAAGACAATAACTGCACACTGAAACTCAACAATGTGACTGAAGATGACAGTGGCAGATTCTTCTTCAGATTTGAGGCAAATACAAGTAATCAGCCCCCTCAGGGATTTACAGGATCGTGGGGTGTGGACCTGACAATACCAGTCTTATCCCTAAAGTTAAATGAAAATGGCCCCGTTAAGGAGCGAGACCACGTCACCTTGGCCTGCACCTCCACCTGTAACCCTCCTCAAATGGAGTTCCTCTGGTTTAAAGATGGCCGCCCACTTCCTGGTGTCTCTGGTGTCCATGGTGGGCAGTATCGCCTAGGTCCACTTTCCCCTAATGACACTGGGAGCTACTCCTGTGGTCTGGGGAAAGGCACATCTACACCAATACTGCTGGATGTGAGATATGCTCCAAGGAACGTTTCTGTTAAGGTCAGCCCGAGCCACGAGGTAGTGGAAGGCAGTCGTCTGACTCTGACCTGCAGCAATAACGCCAACCCTGCAGCAGAGACCTACACCTGGTTTCAGAGGACAGGAACGCTAACTTCACTAAGATTAGGGATGGGGAAAGAACACACCTTCCATGAAATAGATTCTGATGACAGTGGACTGTACTTCTGTATGGCCCAGAATGCCGTTGGATCACAGAACTCTACCGAACAGGAGGTGAAAGTTATAGAATCAGCCCATTTAATGGTGGTCCTGGCAGCATTTGGGGCTCTCTTCCTTGTCACAGCAGTGATTGTGGTGCTCTTCATTTACATAAAAAGATGGAAGTTGAATACGGCCGAGAAGAAGCTTCCAACCAAACCAGTCCCCCAGTTACAGAAAGCAACCTTGTCTAGACCAGAGGACATCTATGAAAACATGAAATGGTCAGCCAAGCCGATCACTGATCCTGATGACATGAACTACGCAGAGCTCAATTTCAGGCCTGCTCCTTCACCCAGGTAGATAAACACAGAGATGCAGCGGAAATAACAATGCAGAAGATGACGATGCAGTTGTCTACAGACAACTGCAAACACACTGAGGTGGTCAGAGAACTTTGATATCTAGACCTCAAGGCCTACAATATGGTAAACTCAAGAAAAGTGAATGAAAAAAAGTATGTTAAGTGACATAGCAAAATACAagctgttatactgtatgtgtatgtacaaACAATGTACAGTGTACAATATACAAAATAAACAGTAAAAAAGTGGCTAATTATACAAATACAAACATAAAATGATTACATGAGCACACAGGGTATGCCATTTAACAACAGATTATTAAAAAATAAGCATATCATATTGCTCTGTAATATATAAGAGCTCTGTATATTTCTCATGATTACAACACTTGAAGAGATGTAATTTTGACACGTCATTATTTCTTAATGAGATTATGCTGTATATTCAATGTGGAAACATGTTAATATGTTAGGATAAACTGTCCTTATCAAATAATGATATGTCACTTACAGATTGTTTGCAGATTAAAGTGAATATAA
>TU144263
TTTATTTCCACCAACTGTTGGTTTGGTTGGCCCACAGTGGAAAGTTACTAAAAAGCATGACAGGCTATTTAGTTGGCCTTTATGGCTGAATTCTCACTTTGTTGTATCATCCACAGATGGAAGTTGAATACGGCCGAGAAGAAGCTTCCAACCAAACCAGTCCCCCAGTTACAGAAAGCAACCTTGTCTAGACCAGAGGACATCTATGAAAACATGAAATGGTCAGCCAAGCCGATCACTGATCCTGATGACATGAACTACGCAGAGCTCAATTTCAGGCCTGCTCCTTCACCCAGGATGCAGCGGAAATAACAATGCAGAAGATGACGATGCAGTTGTCTACAGACAACTGCAAACACACTGAGGTGGTCAGAGAACTTTGATATCTAGACCTCAAGGCCTACAATATGGTAAACTCAAGAAAAGTGAATGAAAAAAAGTATGTTAAGTGACATAGCAAAATACAagctgttatactgtatgtgtatgtacaaACAATGTACAGTGTACAATATACAAAATAAACAGTAAAAAAGTGGCTAATTATACAAATACAAACATAAAATGATTACATGAGCACACAGGGTATGCCATTTAACAACAGATTATTAAAAAATAAGCATATCATATTGCTCTGTAATATATAAGAGCTCTGTATATTTCTCATGATTACAACACTTGAAGAGATGTAATTTTGACACGTCATTATTTCTTAATGAGATTATGCTGTATATTCAATGTGGAAACATGTTAATATGTTAGGATAAACTGTCCTTATCAAATAATGATATGTCACTTACAGATTGTTTGCAGATTAAAGTGAATATAAAATTCA

Function

NR:

description
B-cell receptor CD22-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625650.2 False 1920 mRNA 0.42 8 24124954 24131365
XM_021625658.2 False 2152 mRNA 0.42 8 24124954 24131603
XM_021625667.2 False 2173 mRNA 0.42 8 24124954 24131603
TU144263 True 835 lncRNA 0.36 3 24124948 24126239

Neighbor

gene id symbol gene type direction distance location
LOC110533695 NA coding downstream 33490 24084443 ~ 24091464 (-)
LOC110538540 LOC106605662 coding downstream 227402 23888015 ~ 23897552 (-)
LOC110538403 LOC106605622 coding downstream 517083 23559422 ~ 23607871 (-)
LOC110538151 LOC106577862 coding downstream 604486 23456740 ~ 23520468 (-)
LOC110538371 NA coding downstream 679746 23420299 ~ 23445208 (-)
LOC118938710 LOC106605635 coding upstream 7243 24138846 ~ 24139668 (-)
LOC110538705 LOC106577653 coding upstream 12916 24144519 ~ 24172836 (-)
LOC110538717 LOC106578554 coding upstream 46920 24178523 ~ 24184172 (-)
LOC110538767 LOC106605667 coding upstream 118259 24249862 ~ 24253101 (-)
LOC110538859 LOC106578507 coding upstream 348662 24480265 ~ 24492482 (-)
G124935 NA non-coding downstream 4886 24119691 ~ 24120068 (-)
G124936 NA non-coding downstream 10460 24113674 ~ 24114494 (-)
G124932 NA non-coding downstream 13373 24110699 ~ 24111581 (-)
G124912 NA non-coding downstream 42183 24082446 ~ 24082771 (-)
G124863 LOC106577739 non-coding downstream 47858 24072761 ~ 24077096 (-)
G124958 NA non-coding upstream 41623 24173226 ~ 24173439 (-)
G124944 NA non-coding upstream 45247 24176850 ~ 24177135 (-)
G124943 NA non-coding upstream 106048 24237651 ~ 24238511 (-)
G124994 NA non-coding upstream 123053 24254656 ~ 24254894 (-)
G124995 NA non-coding upstream 124137 24255740 ~ 24256041 (-)
G124840 NA other downstream 220277 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 843156 23279116 ~ 23281851 (-)
G123435 NA other downstream 925702 23185640 ~ 23199252 (-)
G123308 NA other downstream 1119142 23004986 ~ 23005812 (-)
G122972 NA other downstream 1746794 22376153 ~ 22378160 (-)
G125003 NA other upstream 137623 24269226 ~ 24270136 (-)
G125043 NA other upstream 192977 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 400059 24531424 ~ 24540898 (-)
G125305 NA other upstream 643617 24775220 ~ 24776627 (-)
G124947 NA non-coding upstream 3178 24129417 ~ 24129687 (-)

Expression


Co-expression Network