G124863 (LOC106577739)


Basic Information

Item Value
gene id G124863
gene name LOC106577739
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24072761 ~ 24077096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU144246
ataatgacaaTTTCTGTATTTGGCgttctgcaatctcactggatgttggccaggtgggacctAGCGTCccacctaccctagagaggttaacttaCAGAGTCCTCAGTGTATCCCAGGTATCCCTTCATGGGTCCTTCGGCGGCCTTCTTGACAGCCGCCTTGATCTCAGCGTAGCTGCCAGGCCGGGACAGGCGGCAGGTTAGGTCCACCACTGATACGTCAGCCACGGGCACACGGAAGGCCATGCCAGTCAGcttgcGTTGAGCTCAGGGATGACCTTGCCCACAGCCTTGGCAGCTCCGGTGGAGGCAGGGATGATGTTCTGGTGGGCACCACGGCCATCGCGCCATGCCTTGGCAGAGGGGCCGTCCACCGTCTTTTGGGTGGCGGTGTAGGCGTGGACTGTGGTCtgaggaccagagagagaaaaagatgagCATGGTTTCCATAGCGTCAGCAGATGTGTCAATATGGACCACAGGAACAAGAGACATTCAGATGCTCCCTGCTCATGAAGATGCATGGACAGTCTAATGGAAGAAAAACACTGACCATGAGGGCCTCCTCGATGCCGAAGTTGTCGTGGATGACCTTAGCCAGGGGGGCCAGGCAGTTAGTCGTGCAAGATGCATTACTGTGGATGACCAGAGAGAATTACAATAGGTCACCAATTCAGATGAATCAATTATGCTACCCTTATTAAAAGGTTGACAATTCTTGTGAAGAGTTTGCCCTTTGATCATGAATGTATTGGTCAGGAATTAAGGGACTCACCTGACGATGGTCATGCTGGAGGGGTCGTACTTGTCCTCGTTGACTCCCATGACGAACATGGGGGCGTCAGGTGAGGGGGCGGACACAACCACCCGCTTGGCACCACCCTGGATGTGGGACTGtgaaaacagaaaataaaacaCATTGAGAAAGTCTCAAATCTTGAATGCACATCTAATACATCATATTTTATGTTTGTGTCTGGATCTGACTGGTCCTAATACACCTGAGAACTGTTGATAAAGTCTTTAGAGTTTCATAGGTTTATTTTGGAAAAGTACATTAGGGTTACTTATCTGGCTGGCGCAAGGCATTGTGGAGCACTATAGTCATCAGTGCTTGACAAGGACACAAGTGTGTCAGTCTTGTGTCTGGGTACTGCTACTTACAGAGGCCTTGTCAATGCTGAGGAAGACTCCGGTGGACTCAACGACGTAATCGGCACCGGCTTTACCCCATGGGATCTCATGGGGCTTCATACTAATGGGGAGAGAGatattaaggaaagctttgactatgtacagtcgtggccaaaagttttgagattgACAAATTCATTTCCActaagtttgctgcttcagtgtctttagatatttttgtcagattttACTagggaatactgaagtataattacaagcatttcatacgtgtcaaaggtttttattgacaattacatgaagttgatgcaaagagtcattatttgcagtgttg
>TU144249
ccTGAAATGTCAACCtcttttggtgggatggagttggTCTGCTCTTGCTAAGAAaatttgttttcaattaaaaatggtcaaaaataaatcacagtaaggtacttaattgttacccagaaattatttgattgaGCTATAAAATGGCTACATTGAACCTTTAAAGCTCATTATGGTCATTCAGGCATCTACAATGTGCAGTAGTCTAGGCTACTGTCTAATATAGAAATGTACAACCATGCGATAATGACATTCCAAAATAATGGATGTTGTGGCATTTCATGTGAACAGTGTTGAATGCAGAAAATATACCGGTCATTTGGTTTACCTTATTGTGCTACAATATTTGCCACTAGATGTCTCCTGCGATTTCCGTTAGGGCATGATTAAATCACTTGCAATTGTGGACTAACAGAACTTTCAGAATGCATTTGCATGTTCTTGGAGAGTTGATACTTGATTGAGAAACTCAGTCCCATGGCCTTACACCCATTCAATTCTGTCAGATAACCTGGCTGAGAAGTCATCCAGTGCAACATGCATAACCAGATTGATATTGAATTTGCCAATCATGTTTGACTCCTGGTCCTAGGTCCCAACAAGGGTATGCAGACTTTTGTTCCAGCATAGTATTAAAACTGGCCTGGCTAAAGCATCAGCTATTTAAACTGTAGTTTAGGGATTAACATGTGTATGTTCAAATAATGCAAATGTGCATACAAAAGTCAAATCCTGTCATTAATGTAACAAACATCAACAAGCATCATCTTCATGTTCTGCATCCTGAATGCAGATGACGACTTATGTCATTGTGAGAGAACATGTTCTTATAACACTGGGCAAACAGGAAACATGAACAACAAGGCAAGACAGAGACATTTGTAAAGATTTATTACTTTTTTAGTTACAGTAGCTTGTCTTTCTCACTTGACTCTTAAACTAGAATTATTTTAACACCAATATTACATGGTAACAGCCAGTATGGAAACATCACAGCAATGTTCTGGGAACACATACTGTCAAGTCAAAAACGTCTCAGTGGGACTCTCATAAAGGAAAAAACAAATACTTGTACACACAGCCTACTACAGAGACTAAGTTGTGTTGTAGAGAGTGGTGGAGGGCTGGGGGTACTAGGGGTGTGACACTGGAGGGTGTGAGTGCATGTAAAAGGGGGGTGGGTCCCATTGCAGCTTTCTGGAGCCGGACAGTTACTCCTTAGAATGCATGTACAGCAACAGGTCAGCGACACGGTGGCTGTAGCCAAACTCATTGTCATAGGAAATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCAGCGCCAGCATCAAAGATGGAGGAGTGGGTGTCGCCAATGAAGTCAGAAGACACAACAGTCCTCAGTGTATCCCAGGTATCCCTTCATGGGTCCTTCGGCGGCCTTCTTGACAGCCGCCTTGATCTCAGCGTAGCTGCCAGGCCGGGACAGGCGGCAGGTTAGGTCCACCACTGATACGTCAGCCACGGGCACACGGAAGGCCATGCCAGTCAGcttgctgacagagagagagaagacttaCATCAGCACTTGTATAATCAGTCTTTTTCATCACGCACACATCTGCATTCAGCATCTTTGATAAGTAGTAGGCACAATCACATAAATGTATGCAAACAcccatcacaggaggctgctgaggggaggacggctcataaatggctggaatggagtcaaccACATGGAAATCACATGTTTGATGTCATTCCAACCagcctcctgtgacacacacaccatctactgACCCGTTGAGCTCAGGGATGACCTTGCCCACAGCCTTGGCAGCTCCGGTGGAGGCAGGGATGATGTTCTGGTGGGCACCACGGCCATCGCGCCATGCCTTGGCAGAGGGGCCGTCCACCGTCTTTTGGGTGGCGGTGTAGGCGTGGACTGTGGTCATGAGGGCCTCCTCGATGCCGAAGTTGTCGTGGATGACCTTAGCCAGGGGGGCCAGGCAGTTAGTCGTGCAAGATGCATTACTGACGATGGTCATGCTGGAGGGGTCGTACTTGTCCTCGTTGACTCCCATGACGAACATGGGGGCGTCAGGTGAGGGGGCGGACACAACCACCCGCTTGGCACCACCCTGGATGTGGGACTGtgaaaaAGAGGCCTTGTCAATGCTGAGGAAGACTCCGGTGGACTCAACGACGTAATCGGCACCGGCTTTACCCCATGGGATCTCATGGGGCTTCATACTAATGGGGAGAGAGatattaaggaaagctttgactatgtacagtcgtggccaaaagttttgagattgACAAATTCATTTCCActaagtttgctgcttcagtgtctttagatatttttgtcagattttACTagggaatactgaagtataattacaagcatttcatacgtgtcaaaggtttttattgacaattacatgaagttgatgcaaagagtcattatttgcagtgttg
>TU144250
ccTGAAATGTCAACCtcttttggtgggatggagttggTCTGCTCTTGCTAAGAAaatttgttttcaattaaaaatggtcaaaaataaatcacagtaaggtacttaattgttacccagaaattatttgattgaGCTATAAAATGGCTACATTGAACCTTTAAAGCTCATTATGGTCATTCAGGCATCTACAATGTGCAGTAGTCTAGGCTACTGTCTAATATAGAAATGTACAACCATGCGATAATGACATTCCAAAATAATGGATGTTGTGGCATTTCATGTGAACAGTGTTGAATGCAGAAAATATACCGGTCATTTGGTTTACCTTATTGTGCTACAATATTTGCCACTAGATGTCTCCTGCGATTTCCGTTAGGGCATGATTAAATCACTTGCAATTGTGGACTAACAGAACTTTCAGAATGCATTTGCATGTTCTTGGAGAGTTGATACTTGATTGAGAAACTCAGTCCCATGGCCTTACACCCATTCAATTCTGTCAGATAACCTGGCTGAGAAGTCATCCAGTGCAACATGCATAACCAGATTGATATTGAATTTGCCAATCATGTTTGACTCCTGGTCCTAGGTCCCAACAAGGGTATGCAGACTTTTGTTCCAGCATAGTATTAAAACTGGCCTGGCTAAAGCATCAGCTATTTAAACTGTAGTTTAGGGATTAACATGTGTATGTTCAAATAATGCAAATGTGCATACAAAAGTCAAATCCTGTCATTAATGTAACAAACATCAACAAGCATCATCTTCATGTTCTGCATCCTGAATGCAGATGACGACTTATGTCATTGTGAGAGAACATGTTCTTATAACACTGGGCAAACAGGAAACATGAACAACAAGGCAAGACAGAGACATTTGTAAAGATTTATTACTTTTTTAGTTACAGTAGCTTGTCTTTCTCACTTGACTCTTAAACTAGAATTATTTTAACACCAATATTACATGGTAACAGCCAGTATGGAAACATCACAGCAATGTTCTGGGAACACATACTGTCAAGTCAAAAACGTCTCAGTGGGACTCTCATAAAGGAAAAAACAAATACTTGTACACACAGCCTACTACAGAGACTAAGTTGTGTTGTAGAGAGTGGTGGAGGGCTGGGGGTACTAGGGGTGTGACACTGGAGGGTGTGAGTGCATGTAAAAGGGGGGTGGGTCCCATTGCAGCTTTCTGGAGCCGGACAGTTACTCCTTAGAATGCATGTACAGCAACAGGTCAGCGACACGGTGGCTGTAGCCAAACTCATTGTCATACCAGGAAATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCAGCGCCAGCATCAAAGATGGAGGAGTGGGTGTCGCCAATGAAGTCAGAAGACACAGAGTCCTCAGTGTATCCCAGGTATCCCTTCATGGGTCCTTCGGCGGCCTTCTTGACAGCCGCCTTGATCTCAGCGTAGCTGCCAGGCCGGGACAGGCGGCAGGTTAGGTCCACCACTGATACGTCAGCCACGGGCACACGGAAGGCCATGCCAGTCAGcttgctgacagagagagagaagacttaCATCAGCACTTGTATAATCAGTCTTTTTCATCACGCACACATCTGCATTCAGCATCTTTGATAAGTAGTAGGCACAATCACATAAATGTATGCAAACAcccatcacaggaggctgctgaggggaggacggctcataaatggctggaatggagtcaaccACATGGAAATCACATGTTTGATGTCATTCCAACCagcctcctgtgacacacacaccatctactgACCCGTTGAGCTCAGGGATGACCTTGCCCACAGCCTTGGCAGCTCCGGTGGAGGCAGGGATGATGTTCTGGTGGGCACCACGGCCATCGCGCCATGCCTTGGCAGAGGGGCCGTCCACCGTCTTTTGGGTGGCGGTGTAGGCGTGGACTGTGGTCtgaggaccagagagagaaaaagatgagCATGGTTTCCATAGCGTCAGCAGATGTGTCAATATGGACCACAGGAACAAGAGACATTCAGATGCTCCCTGCTCATGAAGATGCATGGACAGTCTAATGGAAGAAAAACACTGACCATGAGGGCCTCCTCGATGCCGAAGTTGTCGTGGATGACCTTAGCCAGGGGGGCCAGGCAGTTAGTCGTGCAAGATGCATTCTGACGATGGTCATGCTGGAGGGGTCGTACTTGTCCTCGTTGACTCCCATGACGAACATGGGGGCGTCAGGTGAGGGGGCGGACACAACCACCCGCTTGGCACCACCCTGGATGTGGGACTGtgaaaaAGAGGCCTTGTCAATGCTGAGGAAGACTCCGGTGGACTCAACGACGTAATCGGCACCGGCTTTACCCCATGGGATCTCATGGGGCTTCATACTAATGGGGAGAGAGatattaaggaaagctttgactatgtacagtcgtggccaaaagttttgagattgACAAATTCATTTCCActaagtttgctgcttcagtgtctttagatatttttgtcagattttACTagggaatactgaagtataattacaagcatttcatacgtgtcaaaggtttttattgacaattacatgaagttgatgcaaagagtcattatttgcagtgttg
>TU144245
ccTGAAATGTCAACCtcttttggtgggatggagttggTCTGCTCTTGCTAAGAAaatttgttttcaattaaaaatggtcaaaaataaatcacagtaaggtacttaattgttacccagaaattatttgattgaGCTATAAAATGGCTACATTGAACCTTTAAAGCTCATTATGGTCATTCAGGCATCTACAATGTGCAGTAGTCTAGGCTACTGTCTAATATAGAAATGTACAACCATGCGATAATGACATTCCAAAATAATGGATGTTGTGGCATTTCATGTGAACAGTGTTGAATGCAGAAAATATACCGGTCATTTGGTTTACCTTATTGTGCTACAATATTTGCCACTAGATGTCTCCTGCGATTTCCGTTAGGGCATGATTAAATCACTTGCAATTGTGGACTAACAGAACTTTCAGAATGCATTTGCATGTTCTTGGAGAGTTGATACTTGATTGAGAAACTCAGTCCCATGGCCTTACACCCATTCAATTCTGTCAGATAACCTGGCTGAGAAGTCATCCAGTGCAACATGCATAACCAGATTGATATTGAATTTGCCAATCATGTTTGACTCCTGGTCCTAGGTCCCAACAAGGGTATGCAGACTTTTGTTCCAGCATAGTATTAAAACTGGCCTGGCTAAAGCATCAGCTATTTAAACTGTAGTTTAGGGATTAACATGTGTATGTTCAAATAATGCAAATGTGCATACAAAAGTCAAATCCTGTCATTAATGTAACAAACATCAACAAGCATCATCTTCATGTTCTGCATCCTGAATGCAGATGACGACTTATGTCATTGTGAGAGAACATGTTCTTATAACACTGGGCAAACAGGAAACATGAACAACAAGGCAAGACAGAGACATTTGTAAAGATTTATTACTTTTTTAGTTACAGTAGCTTGTCTTTCTCACTTGACTCTTAAACTAGAATTATTTTAACACCAATATTACATGGTAACAGCCAGTATGGAAACATCACAGCAATGTTCTGGGAACACATACTGTCAAGTCAAAAACGTCTCAGTGGGACTCTCATAAAGGAAAAAACAAATACTTGTACACACAGCCTACTACAGAGACTAAGTTGTGTTGTAGAGAGTGGTGGAGGGCTGGGGGTACTAGGGGTGTGACACTGGAGGGTGTGAGTGCATGTAAAAGGGGGGTGGGTCCCATTGCAGCTTTCTGGAGCCGGACAGTTACTCCTTAGAATGCATGTACAGCAACAGGTCAGCGACACGGTGGCTGTAGCCAAACTCATTGTCATACCTggAATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCAGCGCCAGCATCAAAGATGGAGGAGTGGGTGTCGCCAATGAAGTCAGAAGACACAACCTGGTGGGACAGGAAATAAGCAGTGAGAAACCCACCAACAGAACAGCTGCAGTATACAGAGATCTATGTCATCTGGGAGCCCTGCTTTTAAACTACAACTTACTAATAACGCATATAATTGCCAGTAAAACTGAGCTCCATTGCCACCTCTGCTCATCTTTCATGTTGACATACATATTTTGTAATTAActtctagggtagggggcagcatttggaattaaaagcatgcccaaat

Function

NR:

description
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144246 False 1485 lncRNA 0.48 2 24072761 24074493
TU144249 False 2465 lncRNA 0.41 6 24072761 24077096
TU144250 False 2609 lncRNA 0.40 5 24072761 24077096
TU144245 True 1610 lncRNA 0.53 2 24075346 24077096

Neighbor

gene id symbol gene type direction distance location
LOC110538540 LOC106605662 coding downstream 175209 23888015 ~ 23897552 (-)
LOC110538403 LOC106605622 coding downstream 464890 23559422 ~ 23607871 (-)
LOC110538151 LOC106577862 coding downstream 552293 23456740 ~ 23520468 (-)
LOC110538371 NA coding downstream 627553 23420299 ~ 23445208 (-)
LOC110538238 LOC106605616 coding downstream 667335 23393669 ~ 23405426 (-)
LOC110533695 NA coding upstream 7347 24084443 ~ 24091464 (-)
LOC110538681 LOC106605635 coding upstream 47858 24124948 ~ 24131603 (-)
LOC118938710 LOC106605635 coding upstream 61750 24138846 ~ 24139668 (-)
LOC110538705 LOC106577653 coding upstream 67423 24144519 ~ 24172836 (-)
LOC110538717 LOC106578554 coding upstream 101427 24178523 ~ 24184172 (-)
G124901 NA non-coding downstream 31503 24040927 ~ 24041258 (-)
G124896 NA non-coding downstream 46077 24026275 ~ 24026684 (-)
G124893 NA non-coding downstream 47473 24024979 ~ 24025288 (-)
G124891 NA non-coding downstream 50799 24020798 ~ 24021962 (-)
G124865 NA non-coding downstream 53544 24018480 ~ 24019217 (-)
G124912 NA non-coding upstream 5350 24082446 ~ 24082771 (-)
G124932 NA non-coding upstream 33603 24110699 ~ 24111581 (-)
G124936 NA non-coding upstream 36578 24113674 ~ 24114494 (-)
G124935 NA non-coding upstream 42595 24119691 ~ 24120068 (-)
G124840 NA other downstream 168084 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 790963 23279116 ~ 23281851 (-)
G123435 NA other downstream 873509 23185640 ~ 23199252 (-)
G123308 NA other downstream 1066949 23004986 ~ 23005812 (-)
G122972 NA other downstream 1694601 22376153 ~ 22378160 (-)
G125003 NA other upstream 192130 24269226 ~ 24270136 (-)
G125043 NA other upstream 247484 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 454566 24531424 ~ 24540898 (-)
G125305 NA other upstream 698124 24775220 ~ 24776627 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110490449 scmh1 misc NC_048566.1 CM023220.2 44571948 ~ 44606865 (-)