XLOC_020586 (tctex1d2)


Basic Information

Item Value
gene id XLOC_020586
gene name tctex1d2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 35472653 ~ 35479229 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040755
CGGATGAAACCGAGTTGTTATGACAACGTCGGTAAAGCTGTAAAGCGAAAGTGCGAAACTACTATCGCACAGAAGCGTGATATTTCACTCATGGATACAGGAGCGAACACGTACCTCATTAGGCCGAATTATAAAGACAAGTTCAAGGCAGGTGTGGCGAAGGAGTGCATTGGAGAAATCCTAAGGGAGCAGCTGTATGGAGTTCAGTATGATCCCGAAGAGGTTCCCACATTATCCAGATCTTTAGCAGACTCCATTAAACACAAGCTAAAAGACATGGCCTTTGACAGATACAAGTTCATCGTGCAGGTGGTTATTGGAGAACAGCGAGGAGAAGGAGTCAAGATGGCTGCGCGCTGCTTCTGGGATGCAGATACAGACAATTATGCTCAGGAGATATATATGAACGACAGCTTGTTCTGTGTAGCTGCTGCTTTTGCTGTGTATTATTACTGAAGACGCGCTGATGACCACATATATGCAGCTTGGGCCTCAAAAGGGTATATTTGTGCTGTTTATTTGAACTAAGTCAATCTCTTTCGTTTCTGTTGTTCAGAAGTCTTTGCTGTATGATATTTTGAATATATGAAGCTTTACAATTTTCAATAATGTtcgatttattttatatacagaaataataaaagaaaattaactTTTGTCACTGTCATGCTCCATTTGGTTCATTTCATATGACCGACTGACtgatatttagtttaattttcatCTAATAACTAATTATTAATCCGTTCACTCTAAACATTcatagaaaaattaataaattaaacaaatccaCATAAAGTAATCAAAGTTTAATCAAAGTATTTTGTGGGAAAACAACTACTTTATATGATACGGATTTAATGATGGCATCTATTCACATATATAATCATCTCAATGGGAACATTTTGAACAATCAAGAGTTTAGTTGAACAAACTTTCAATGGACGGACTGAAATAT
>TCONS_00040756
ATGAAACCGAGTTGTTATGACAACGTCGGTAAAGCTGTAAAGCGAAAGTGCGAAACTACTATCGCACAGAAGCGTGATATTTCACTCATGGATACAGGAGCGAACACGTACCTCATTAGGCCGAATTATAAAGACAAGTTCAAGGCAGGTGTGGCGAAGGAGTGCATTGGAGAAATCCTAAGGGAGCAGCTGTATGGAGTTCAGTATGATCCCGAAGAGGTTCCCACATTATCCAGATCTTTAGCAGACTCCATTAAACACAAGCTAAAAGACATGGCCTTTGACAGATACAAGTTCATCGTGCAGGTGGTTATTGGAGAACAGCGAGGAGAAGGAGTCAAGATGGCTGCGCGCTGCTTCTGGGATGCAGATACAGACAATTATGCTCAGGAGATATATATGAACCTTGTTCTGTGTAGCTGCTGCTTTTGCTGTGTATTATTACTGAAGACGCatggtaaggtttataatctaattaatacagattaa

Function

symbol description
tctex1d2 tctex1 domain-containing protein 2

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

Ensembl:

ensembl_id ENSDARG00000054255

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040755 False 958 mRNA 0.37 5 35472653 35478651
TCONS_00040756 True 489 mRNA 0.43 6 35472656 35479229

Neighbor

gene id symbol gene type direction distance location
XLOC_020585 CU207281.3 coding upstream 16978 35454382 ~ 35455675 (+)
XLOC_020584 rubcn coding upstream 160004 35275206 ~ 35312649 (+)
XLOC_020583 tsc22d2 coding upstream 208751 35205017 ~ 35263902 (+)
XLOC_020582 rnf13 coding upstream 294871 35131890 ~ 35177782 (+)
XLOC_020581 srfa coding upstream 347998 35089031 ~ 35124655 (+)
XLOC_020587 hykk.2 coding downstream 26390 35505619 ~ 35531787 (+)
XLOC_020588 NA coding downstream 64701 35543930 ~ 35724375 (+)
XLOC_020589 LO017643.1 coding downstream 262425 35741654 ~ 35741770 (+)
XLOC_020590 EPHB3 coding downstream 451297 35930526 ~ 35941371 (+)
XLOC_020591 NA coding downstream 671639 36150868 ~ 36168478 (+)
XLOC_020579 NA non-coding upstream 456785 35011984 ~ 35015868 (+)
XLOC_020578 NA non-coding upstream 511849 34956802 ~ 34960804 (+)
XLOC_020577 CU657925.1 non-coding upstream 667966 34802598 ~ 34804687 (+)
XLOC_020570 NA non-coding upstream 819029 34626998 ~ 34653624 (+)
XLOC_020592 NA non-coding downstream 1013953 36493182 ~ 36496652 (+)
XLOC_020593 NA non-coding downstream 1052330 36531559 ~ 36545116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_01580548_01582805 TCTEX1D2 coding CI01000015 null 1580548 ~ 1583078 (+)