CI01000015_01580548_01582805 (TCTEX1D2)


Basic Information

Item Value
gene id CI01000015_01580548_01582805
gene name TCTEX1D2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1580548 ~ 1583078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_01580548_01582805.mRNA
GTTCAAGGCAGGGGTGGCAAAGGAGTGTATTAGAGAAATCCTCAGGGAACAGCTGTATGGAGTGCAGTATAATCCAGAGGAGGTTCCCACATTATCAAGATCTTTAGCAGACTCGATTAAAAACAAGCTGAAAGATGTGGGCTTTGACAGATACAAGCTCATTGTGCAAGTGGTTGTTGGAGAGCAGCGTGGGGAGGGAGTCAAGATGGCTGCACGCTGCTTCTGGGATGCAGATACAGACAGCTATGCTCAAGATATATACATGAACCATTCGGTGTGTATTATTACTGAAGACAAACAGAAGATGTGCTGAGGACCAAATATTTTGTAGGGGAGTATTTTTGTGATATTTATTTAAACCATCACATTCAGTTTTAATATCAGTCGCATTCATGTTTATTGGTCTGTATACCTCTCTGTATGATATTTTTTCCTGATATTACTGTCTGAATGCTGAAAATGTTCATATTATTATTATTATTATATTATTATCATTTAACAAAATATTACAGCAATAGCTTTGACATGTCTGGATTGAAGGCACATAATTCCATTTCTGAATGCCGCCTTAATGAAAATAACTACA

Function

symbol description
tctex1d2 tctex1 domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_01580548_01582805.mRNA True 586 mRNA 0.38 4 1580548 1583078

Neighbor

gene id symbol gene type direction distance location
CI01000015_01412031_01434518 RUBCN coding upstream 146030 1412031 ~ 1434518 (+)
CI01000015_01405454_01407722 NA coding upstream 171813 1404981 ~ 1409173 (+)
CI01000015_01349369_01366864 ZNRF4, RNF13 coding upstream 213037 1349369 ~ 1367511 (+)
CI01000015_01307849_01327079 SRFA, SRF coding upstream 252172 1306824 ~ 1328376 (+)
CI01000015_01288157_01300925 NA coding upstream 279417 1288157 ~ 1301131 (+)
CI01000015_01638133_01646368 HYKK.2, HYKK coding downstream 52348 1635426 ~ 1646409 (+)
CI01000015_01688642_01691631 NA coding downstream 105564 1688642 ~ 1691941 (+)
CI01000015_02012379_02029276 EPHB3 coding downstream 429301 2012379 ~ 2029701 (+)
CI01000015_02268895_02277023 NA coding downstream 685537 2268615 ~ 2277083 (+)
CI01000015_02366085_02370003 NA coding downstream 782636 2365714 ~ 2370475 (+)
G87425 NA non-coding upstream 1139 1579056 ~ 1579409 (+)
G87423 NA non-coding upstream 4061 1576200 ~ 1576487 (+)
G87421 NA non-coding upstream 5198 1575053 ~ 1575350 (+)
G87420 NA non-coding upstream 5783 1574489 ~ 1574765 (+)
G87416 NA non-coding upstream 8128 1569832 ~ 1572420 (+)
G87435 NA non-coding downstream 30584 1613662 ~ 1613940 (+)
G87442 NA non-coding downstream 63582 1646660 ~ 1648169 (+)
G87459 NA non-coding downstream 81291 1664369 ~ 1664588 (+)
G87468 NA non-coding downstream 89160 1672238 ~ 1672461 (+)
G87487 NA non-coding downstream 126895 1709973 ~ 1710185 (+)
G87432 NA other downstream 28005 1611083 ~ 1611387 (+)
G87972 NA other downstream 292926 1876004 ~ 1876594 (+)
G88172 NA other downstream 800938 2384016 ~ 2526510 (+)
CI01000015_02512276_02523824 NA other downstream 929020 2511546 ~ 2524572 (+)
CI01000015_03011472_03026518 NA other downstream 1439918 3011472 ~ 3026636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020586 tctex1d2 coding NC_007133.7 CM002906.2 35472653 ~ 35479229 (+)