CI01000015_01349369_01366864 (ZNRF4, RNF13)


Basic Information

Item Value
gene id CI01000015_01349369_01366864
gene name ZNRF4, RNF13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1349369 ~ 1367511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_01349369_01366864.mRNA
GGCTTCCTGATCGGTGCCCGTCCTGAGAATGCCTGTGTGCCAATCGATCCTCCTCCGCTGAGGGACAACCTCACCAGCGCCTTCATTGTGCTGATTAAGCGCTTCGACTGTAACTTTGACATCAAGGTCCTCCATGCGCAGAAGGCAGGCTACAAGGCGGCGATTGTCCACAATGTGGACTCTGATGACTTAATCAGCATGGGATCCAATGATCTGGATATTCTGAAGCAGATAGACATTCCATCAGTGTTTATTGGTGAAGAAGCGGCCAACTCTCTCAAAGAGGATTACATCTATGAGAAAGGTGGTCATGTGATTCTCATGCCAGACTTCAGTTTGCCTCTGGAATATTACCTGATCCCATTCCTCATCATCGTTGGAATCTGCCTTATCCTTATTGTAGTTTTCATGATCACAAAGTTTGTACAGGACAGACATAGAGCCAGGAGAAGTCGCTTACGCAAGGACCAGCTGAAGAAACTCCCCATTCACAAGTTTAAGAAAGGTGATTCTTATGATGTTTGTGCCATTTGTTTGGATGAGTATGAAGAAGGAGACAAGCTTCGGGTCCTGCCCTGCTCACATGCCTATCACTGCAAGTGTGTTGACCCATGGCTGACCAAAACCAAGAAGACCTGTCCGGTGTGCAAGCAGAAAGTTGTGCCGTCCGATGGCGACTCAGACTCTGAGTCTGATTCTGGTGACAGCGGCGGCGAGGAGAACGAAGTTTCGGAAAACACGCCCCTGTTGCGATCTCTGGCCTCTACTAGCGCCCATTCCTTTGGCACCATGTCCGGCTCGCCGTCCCAACATGAAGTGGAGTCATCGGACTATGACGAGCACAGTGACACTACCGATAGTGAGGAGGAGGTCACAGTGGAAACTGTTGTCGTACAGCTGCAGCAGGGGCGTCCGGACAACATGGAGGCCAACGCCTAAATGTCAGCCCTTGATAACTCAGACTCTTAATAGAGATTCCAATACATTTCACGATCACTTACAGTTTATCATTCGAAATCTGTTTAACATACACCGTGTGCAGCGATACTATACAGCAAAATTTTATATATATAATATATATATATATATATATATATAAAAAAAAAATGTATATCACGATTTCCCCCAAAAGATGCTGCGAAATTTATTACGCACATTTTTGCCAACCTCCACAGATGAACGTCACCTCTGGGAATGTAATTTGTGCTTGCTGACAAAATGCCAAACTCATCTCAGACGTGTATCCGATTGCAAACAACTGCATGTTTTATACGACACAATGAGACTTTATTATTGACACGTCAACAAAACTGATGGTTGGTACAAGTTTTAGTTTGATCATTAACAGTGGAACCGTTCTAAGTATCAGTCACTCGGAAGTGATTTTGGAAGTGTAGTTAGGTAATAACACATCATTTATGTACTGTAAGTAAGAAATAAGTTGGGTAAGGAGTTGAGTTTTTTTGTTATAACACAACGTGAACTGTTACCAATGTCTGGTTGCCTTTTAATGTTGCTGTACTGTAAATATATCAATTTCTGCTCATCCTTGTTTCTAAGTAGTCTATATTCATTTCTCTTCATGA

Function

symbol description
rnf13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 73. Orthologous to human RNF13 (ring finger protein 13).
znrf4 Predicted to enable ubiquitin protein ligase activity. Involved in ubiquitin-dependent protein catabolic process. Located in endoplasmic reticulum membrane.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_01349369_01366864.mRNA True 1586 mRNA 0.44 7 1349369 1367511

Neighbor

gene id symbol gene type direction distance location
CI01000015_01307849_01327079 SRFA, SRF coding upstream 20993 1306824 ~ 1328376 (+)
CI01000015_01288157_01300925 NA coding upstream 48238 1288157 ~ 1301131 (+)
CI01000015_01080504_01101091 NA coding upstream 247986 1080504 ~ 1101383 (+)
CI01000015_01020856_01025441 HOGA1 coding upstream 323716 1020856 ~ 1025653 (+)
CI01000015_01015968_01016675 NA coding upstream 332523 1015623 ~ 1017700 (+)
CI01000015_01405454_01407722 NA coding downstream 37470 1404981 ~ 1409173 (+)
CI01000015_01412031_01434518 RUBCN coding downstream 44520 1412031 ~ 1434518 (+)
CI01000015_01580548_01582805 TCTEX1D2 coding downstream 213037 1580548 ~ 1583078 (+)
CI01000015_01638133_01646368 HYKK.2, HYKK coding downstream 267915 1635426 ~ 1646409 (+)
CI01000015_01688642_01691631 NA coding downstream 321131 1688642 ~ 1691941 (+)
G87355 NA non-coding upstream 12839 1336299 ~ 1336530 (+)
G87220 NA non-coding upstream 43459 1302221 ~ 1305910 (+)
G87337 NA non-coding upstream 64092 1278270 ~ 1285277 (+)
G87331 NA non-coding upstream 98403 1250761 ~ 1250966 (+)
G87216 NA non-coding downstream 703 1368214 ~ 1375675 (+)
G87223 NA non-coding downstream 12170 1379681 ~ 1398822 (+)
G87372 NA non-coding downstream 107599 1475110 ~ 1475479 (+)
G87373 NA non-coding downstream 109858 1477369 ~ 1477960 (+)
G87432 NA other downstream 243572 1611083 ~ 1611387 (+)
G87972 NA other downstream 508493 1876004 ~ 1876594 (+)
G88172 NA other downstream 1016505 2384016 ~ 2526510 (+)
CI01000015_02512276_02523824 NA other downstream 1144587 2511546 ~ 2524572 (+)
CI01000015_03011472_03026518 NA other downstream 1655485 3011472 ~ 3026636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009416 rnf13,LOC106613488,LOC107551383 coding CM030126.1 CM030126.1 37360085 ~ 37402881 (-)