CI01000015_01080504_01101091


Basic Information

Item Value
gene id CI01000015_01080504_01101091
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1080504 ~ 1101383 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_01080504_01101091.mRNA
ATTGTGAGCCAGAGGGTGTGTCAGATTGGTCATTTAATGAAAATTGTCTCTTTTGCTGCTTAAGACGTGAAAAAGTGAAGGAAAATTTGGTTGGTTTGAACAACCAAGTGTTATCAGAAGCGGACAGCTTCAAGCAAGAGCAGTCCAATATTAACAAACTTGAGAAGCAAGCAGAGGATTTCCTCAATGTTGTCTTCTATAGAAAGGACCTCCCAAGATTCACAGACCCCCACATTCCTCTAGTGGCTCGTGAGATCATGCAGCGAATGATCCGACAGTTTGCTGCCGAATATACCTCAAAAACCAGCTCAACTCAGGACGTACCCCAACCCCAGTCCCAGCCCAACGGCACCAAGGACCAAAGCCTGCCGAAAGCGCCCTCGCTGGACCCGGACGCCTCCACACCTGCTCCCGTCTGTGGCGGCACCGGTACCGGCACCGCTGCCTCCGCACAGAATCCCGTCCTCAGCAAGCTTCTCATGGCAGACCAGGACTCCCCACTGGACCTTACCGTCAAGAAACCAGAGACAGAACCCAGTGAACAAGATGGAGTCCTTGACCTCTCAACTAAGAAGAACCATAGTCATGGTAGTGTCTCAATGAAAAGCTCTCATGGTTTCTCAATCATGCCCACAGTTAAGGGGCGTTCCCAGAGAGCTGATCACAACTATCGAGATGTGGACGATGAGGATGGCTTGCCACCGAGAAGCTTGCATGATGGGATAAGGGAGAATTGTATTGGTTCTGGAACCCTCAAGCCACCGTTGGCCCGCTCGCTCCTCATAAAAGAGGAACTCCTGAACCAGAAACATCGCCTTCTTAGCCAACCCACACCTCTTTCTTTGGCTAGCCTAGAGTCTGTGGGTCTCCTCAACAGCCAAGCCCAGTCCCTTCTTTCACGTGATGGAACATGGGGAAAATCCCATCTAGACGGCCTCCTGAAGCTCAAACAAATTGGTGGCAATCTTAGTGACCTAAATGACCTGCCTCTTTTCCAGGAGAACCAAGGCCTGTTCACCAAGGGTACAAAGTCCCATGACACTGGTTCCATCACAGTAAAGAAAGAACCAGGACATTCCCCTCCAGTGGACTTGAAGATTCCACAAGTCAGAGGCATGGACCTGTCTTGGGACTCCCATGGGAACGCCTCGGATCTCTATAGTTACAGCTCTATAGCTATGGGCAACGTGCACTCTGAGAATGCGCTCAGTAGGAAGCTGAGGGCCATTTTGCCAAAGCAGAGTCGCAGGGCCGCTCTCGGAGGCCTTCTCGATGGAGGAGCAGTGGGCGAGTACTGGGGGGCAGACCTCGAACAGCCAACATTGGGACCCCAGTACCCAACATCAGATCCAGAGGCAGACCCAACAGGCTCCAAACAACCCCGAAAGAAAAGGGGACGATATCGCCAGTACAACAGCGAGATTCTAGAAGAAGCCATTGCTGTGGTGATGAGTGGGAAGATGAGCGTTTCAAAGGCGCAAAACATATACGGTATTCCCCACAGTACCTTGGAGTACAAGGTAAAAGAGAGGATGGGCACACTGAAGAACCCACCAAAGAAAAAGCTTAAACTGATGATGAGGGCAGAAGGGCAAGACTCTGGGATCGCTGCCGAAACCGAATCCACGTCGACGCCCGCCACCACACCCATCGCAACGCAAGTGGATGTCTTGCAGGGGACAGGAGACAAAGTCGAGTAGATTACACAGAACACCTCATAAAATGGAAAAAAGTTTTAGATTCTGACAAACAAAAAAATGAAGATTTGGAGTTGAGGATGGGGCTTTAATTGTGCCAATTTACTTGCAGTATCTGGGTGAGCACAACTGCAGGGATTGATGGGAGGATATAAGCCTGATAACTGGGGATAAGAAAAAAATTGGCAGTTATCAGTGGTCACATTGACACTGCAAGCATTTGCTGAAATTTTTTACAACAAAGCAACAAATGCGTTATAAAGCCATAAGAGAGTATCGACAGAGAGACATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_01080504_01101091.mRNA True 1992 mRNA 0.49 5 1080504 1101383

Neighbor

gene id symbol gene type direction distance location
CI01000015_01020856_01025441 HOGA1 coding upstream 54851 1020856 ~ 1025653 (+)
CI01000015_01015968_01016675 NA coding upstream 63658 1015623 ~ 1017700 (+)
CI01000015_01002365_01011214 HYKK coding upstream 69229 1002365 ~ 1011275 (+)
CI01000015_00970175_00973727 NA coding upstream 106764 970175 ~ 973740 (+)
CI01000015_00890625_00902801 CP coding upstream 177508 890625 ~ 902996 (+)
CI01000015_01288157_01300925 NA coding downstream 186774 1288157 ~ 1301131 (+)
CI01000015_01307849_01327079 SRFA, SRF coding downstream 205588 1306824 ~ 1328376 (+)
CI01000015_01349369_01366864 ZNRF4, RNF13 coding downstream 247986 1349369 ~ 1367511 (+)
CI01000015_01405454_01407722 NA coding downstream 303598 1404981 ~ 1409173 (+)
CI01000015_01412031_01434518 RUBCN coding downstream 310648 1412031 ~ 1434518 (+)
G87269 NA non-coding upstream 28472 1051776 ~ 1052032 (+)
G87268 NA non-coding upstream 29468 1050801 ~ 1051036 (+)
G87267 NA non-coding upstream 29962 1050262 ~ 1050542 (+)
G87261 NA non-coding upstream 43190 1036698 ~ 1037314 (+)
G87258 NA non-coding upstream 48658 1031437 ~ 1031846 (+)
G87224 NA non-coding downstream 19835 1121218 ~ 1129967 (+)
G87225 NA non-coding downstream 29607 1130990 ~ 1136259 (+)
G87233 NA non-coding downstream 40577 1141960 ~ 1143392 (+)
G87312 NA non-coding downstream 117632 1219015 ~ 1233531 (+)
G87323 NA non-coding downstream 139378 1240761 ~ 1241065 (+)
G87432 NA other downstream 509700 1611083 ~ 1611387 (+)
G87972 NA other downstream 774621 1876004 ~ 1876594 (+)
G88172 NA other downstream 1282633 2384016 ~ 2526510 (+)
CI01000015_02512276_02523824 NA other downstream 1410715 2511546 ~ 2524572 (+)
CI01000015_03011472_03026518 NA other downstream 1921613 3011472 ~ 3026636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020576 lcor coding NC_007133.7 CM002906.2 34784075 ~ 34818128 (+)