RNA id: CI01000015_01080504_01101091.mRNA


Basic Information

Item Value
RNA id CI01000015_01080504_01101091.mRNA
length 1992
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000015_01080504_01101091
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1080504 ~ 1101383 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTGAGCCAGAGGGTGTGTCAGATTGGTCATTTAATGAAAATTGTCTCTTTTGCTGCTTAAGACGTGAAAAAGTGAAGGAAAATTTGGTTGGTTTGAACAACCAAGTGTTATCAGAAGCGGACAGCTTCAAGCAAGAGCAGTCCAATATTAACAAACTTGAGAAGCAAGCAGAGGATTTCCTCAATGTTGTCTTCTATAGAAAGGACCTCCCAAGATTCACAGACCCCCACATTCCTCTAGTGGCTCGTGAGATCATGCAGCGAATGATCCGACAGTTTGCTGCCGAATATACCTCAAAAACCAGCTCAACTCAGGACGTACCCCAACCCCAGTCCCAGCCCAACGGCACCAAGGACCAAAGCCTGCCGAAAGCGCCCTCGCTGGACCCGGACGCCTCCACACCTGCTCCCGTCTGTGGCGGCACCGGTACCGGCACCGCTGCCTCCGCACAGAATCCCGTCCTCAGCAAGCTTCTCATGGCAGACCAGGACTCCCCACTGGACCTTACCGTCAAGAAACCAGAGACAGAACCCAGTGAACAAGATGGAGTCCTTGACCTCTCAACTAAGAAGAACCATAGTCATGGTAGTGTCTCAATGAAAAGCTCTCATGGTTTCTCAATCATGCCCACAGTTAAGGGGCGTTCCCAGAGAGCTGATCACAACTATCGAGATGTGGACGATGAGGATGGCTTGCCACCGAGAAGCTTGCATGATGGGATAAGGGAGAATTGTATTGGTTCTGGAACCCTCAAGCCACCGTTGGCCCGCTCGCTCCTCATAAAAGAGGAACTCCTGAACCAGAAACATCGCCTTCTTAGCCAACCCACACCTCTTTCTTTGGCTAGCCTAGAGTCTGTGGGTCTCCTCAACAGCCAAGCCCAGTCCCTTCTTTCACGTGATGGAACATGGGGAAAATCCCATCTAGACGGCCTCCTGAAGCTCAAACAAATTGGTGGCAATCTTAGTGACCTAAATGACCTGCCTCTTTTCCAGGAGAACCAAGGCCTGTTCACCAAGGGTACAAAGTCCCATGACACTGGTTCCATCACAGTAAAGAAAGAACCAGGACATTCCCCTCCAGTGGACTTGAAGATTCCACAAGTCAGAGGCATGGACCTGTCTTGGGACTCCCATGGGAACGCCTCGGATCTCTATAGTTACAGCTCTATAGCTATGGGCAACGTGCACTCTGAGAATGCGCTCAGTAGGAAGCTGAGGGCCATTTTGCCAAAGCAGAGTCGCAGGGCCGCTCTCGGAGGCCTTCTCGATGGAGGAGCAGTGGGCGAGTACTGGGGGGCAGACCTCGAACAGCCAACATTGGGACCCCAGTACCCAACATCAGATCCAGAGGCAGACCCAACAGGCTCCAAACAACCCCGAAAGAAAAGGGGACGATATCGCCAGTACAACAGCGAGATTCTAGAAGAAGCCATTGCTGTGGTGATGAGTGGGAAGATGAGCGTTTCAAAGGCGCAAAACATATACGGTATTCCCCACAGTACCTTGGAGTACAAGGTAAAAGAGAGGATGGGCACACTGAAGAACCCACCAAAGAAAAAGCTTAAACTGATGATGAGGGCAGAAGGGCAAGACTCTGGGATCGCTGCCGAAACCGAATCCACGTCGACGCCCGCCACCACACCCATCGCAACGCAAGTGGATGTCTTGCAGGGGACAGGAGACAAAGTCGAGTAGATTACACAGAACACCTCATAAAATGGAAAAAAGTTTTAGATTCTGACAAACAAAAAAATGAAGATTTGGAGTTGAGGATGGGGCTTTAATTGTGCCAATTTACTTGCAGTATCTGGGTGAGCACAACTGCAGGGATTGATGGGAGGATATAAGCCTGATAACTGGGGATAAGAAAAAAATTGGCAGTTATCAGTGGTCACATTGACACTGCAAGCATTTGCTGAAATTTTTTACAACAAAGCAACAAATGCGTTATAAAGCCATAAGAGAGTATCGACAGAGAGACATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99371 lncRNA upstream 28472 1051776 ~ 1052032 (+) True G87269
TU99370 lncRNA upstream 29468 1050801 ~ 1051036 (+) True G87268
TU99369 lncRNA upstream 29962 1050262 ~ 1050542 (+) True G87267
TU99363 lncRNA upstream 43190 1036698 ~ 1037314 (+) True G87261
TU99360 lncRNA upstream 48658 1031437 ~ 1031846 (+) True G87258
TU99325 lncRNA downstream 19835 1121218 ~ 1129967 (+) True G87224
TU99326 lncRNA downstream 29607 1130990 ~ 1136259 (+) True G87225
TU99334 lncRNA downstream 40577 1141960 ~ 1143392 (+) True G87233
TU99426 lncRNA downstream 117632 1219015 ~ 1233531 (+) True G87312
TU99437 lncRNA downstream 139378 1240761 ~ 1241065 (+) True G87323
CI01000015_01020856_01025441.mRNA mRNA upstream 54851 1020856 ~ 1025653 (+) True CI01000015_01020856_01025441
CI01000015_01015968_01016675.mRNA mRNA upstream 63658 1015623 ~ 1016846 (+) False CI01000015_01015968_01016675
CI01000015_01002365_01011214.mRNA mRNA upstream 69229 1002365 ~ 1011275 (+) False CI01000015_01002365_01011214
CI01000015_00970175_00973727.mRNA mRNA upstream 106764 970175 ~ 973740 (+) True CI01000015_00970175_00973727
CI01000015_00890625_00902801.mRNA mRNA upstream 177508 890625 ~ 902996 (+) True CI01000015_00890625_00902801
CI01000015_01288157_01300925.mRNA mRNA downstream 186774 1288157 ~ 1301131 (+) True CI01000015_01288157_01300925
CI01000015_01307849_01327079.mRNA mRNA downstream 205588 1306971 ~ 1328376 (+) False CI01000015_01307849_01327079
CI01000015_01349369_01366864.mRNA mRNA downstream 247986 1349369 ~ 1367511 (+) True CI01000015_01349369_01366864
CI01000015_01405454_01407722.mRNA mRNA downstream 303598 1404981 ~ 1408735 (+) False CI01000015_01405454_01407722
CI01000015_01412031_01434518.mRNA mRNA downstream 310648 1412031 ~ 1434518 (+) True CI01000015_01412031_01434518
TU99556 other downstream 509700 1611083 ~ 1611387 (+) True G87432
TU100157 other downstream 774621 1876004 ~ 1876594 (+) True G87972
TU100381 other downstream 1282633 2384016 ~ 2500594 (+) False G88172
TU100556 other downstream 1410715 2512970 ~ 2513011 (+) True G88328
TU100954 other downstream 1921613 3026680 ~ 3030290 (+) False G88670

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040736 True 2045 mRNA 0.51 6 NC_007133.7 34784075 ~ 34818128 (+)