RNA id: TU99360


Basic Information

Item Value
RNA id TU99360
length 410
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G87258
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1031437 ~ 1031846 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAACAAAACAGACGTTTGAAGCAGTTTTACTCACCACCTGCGGTTCCGACTTATGACCGGGATCATTATTGCTGTGACCGCTCCATCTTTCAGTTTCAAACGATCTGTAAATCCAGCGTAGAACTGATGGGCCTTGTTTATGAAACCATAAGCGCCGATCCTGAGGGCTCAAGCAGCCACGGAAAAACACAAGATATTCTCCATTCATTTTAACCAATAAAAACGTGATTGCAACTATCAGTTTCTATGGTTATTTTAATAACAAATATCGAGTGTGCATCAATGTAATGCGTGAGAACAAATCTCTCAGCTCCACAGAACACTGGGTTCTTTGGGAAGCAAGGTTATCTTTCCCTCACAACCAAAAACACACTTCTTTGGTGACATTGTTGATTTCGTGAAGTCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99305 lncRNA upstream 12648 1016228 ~ 1018789 (+) True G87214
TU99303 lncRNA upstream 14111 1016228 ~ 1016275 (+) False G87214
TU99355 lncRNA upstream 17636 1013584 ~ 1013801 (+) True G87253
TU99351 lncRNA upstream 21830 1009372 ~ 1009607 (+) True G87249
TU99350 lncRNA upstream 22660 1008503 ~ 1008777 (+) True CI01000015_01002365_01011214
TU99363 lncRNA downstream 4852 1036698 ~ 1037314 (+) True G87261
TU99369 lncRNA downstream 18416 1050262 ~ 1050542 (+) True G87267
TU99370 lncRNA downstream 18955 1050801 ~ 1051036 (+) True G87268
TU99371 lncRNA downstream 19930 1051776 ~ 1052032 (+) True G87269
TU99325 lncRNA downstream 89372 1121218 ~ 1129967 (+) True G87224
CI01000015_01020856_01025441.mRNA mRNA upstream 5784 1020856 ~ 1025653 (+) True CI01000015_01020856_01025441
CI01000015_01015968_01016675.mRNA mRNA upstream 14591 1015623 ~ 1016846 (+) False CI01000015_01015968_01016675
CI01000015_01002365_01011214.mRNA mRNA upstream 20162 1002365 ~ 1011275 (+) False CI01000015_01002365_01011214
CI01000015_00970175_00973727.mRNA mRNA upstream 57697 970175 ~ 973740 (+) True CI01000015_00970175_00973727
CI01000015_00890625_00902801.mRNA mRNA upstream 128441 890625 ~ 902996 (+) True CI01000015_00890625_00902801
CI01000015_01080504_01101091.mRNA mRNA downstream 48658 1080504 ~ 1101383 (+) True CI01000015_01080504_01101091
CI01000015_01288157_01300925.mRNA mRNA downstream 256311 1288157 ~ 1301131 (+) True CI01000015_01288157_01300925
CI01000015_01307849_01327079.mRNA mRNA downstream 275125 1306971 ~ 1328376 (+) False CI01000015_01307849_01327079
CI01000015_01349369_01366864.mRNA mRNA downstream 317523 1349369 ~ 1367511 (+) True CI01000015_01349369_01366864
CI01000015_01405454_01407722.mRNA mRNA downstream 373135 1404981 ~ 1408735 (+) False CI01000015_01405454_01407722
TU99556 other downstream 579237 1611083 ~ 1611387 (+) True G87432
TU100157 other downstream 844158 1876004 ~ 1876594 (+) True G87972
TU100381 other downstream 1352170 2384016 ~ 2500594 (+) False G88172
TU100556 other downstream 1480252 2512970 ~ 2513011 (+) True G88328
TU100954 other downstream 1991150 3026680 ~ 3030290 (+) False G88670

Expression Profile