RNA id: CI01000015_01307849_01327079.mRNA


Basic Information

Item Value
RNA id CI01000015_01307849_01327079.mRNA
length 3954
RNA type mRNA
GC content 0.46
exon number 10
gene id CI01000015_01307849_01327079
representative False

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 1306824 ~ 1328376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATATTAAACTCAGCAGTCAGTCTCACAAAGCAATTTTTGTTTTAAAAGACAGTAAAGTGAATTTGATTTACCTTATCAGACACTTCTAGCCAGAAATTGTGCATCTTTGTCGGTAATATTATTGTTCGGGTCTAAGGTCCAAGCACAGCTAGTTCGCTGTGTATGACGTAAACCATTTTTGTCGGCCAAATCAGATTTGAACCAATCGCAAAGTCGGAGAGGTTTGCGTAACCAATCGCAGCGCAGCACTGTGACTCACCATACATGGACAGCCATCGCCATATAAGGAAACATCGACTAGCTTTATATGGAGGAAAGTAGATCTCTGGGCGAACGTACTCGTGAGTTGAATTCCCTAAATAAGTGCGCCATCAGCGTTTACTCTCTCCCAAAAAACATTAAAGTTTATATACAACCAAAATATCCTAATTTAAGTGTTCAACGTGAATTATTTAGCGCGATATTGACGTTACTGTTGGTAACTAGCTCTGTTTGCGGAGGTACATTGTATGGTCGCTATTCGTCGTTTCCAAATGTGGCAAGCGCAGCGTAAGTTCAGTTGAGGTTTGATTGATGGACTGTAGGCGTAAACTACATGTTGTAAACTTTGTACGATGGTCGTAAAGGGCTAGTTTTAGAGGTTTCTTTTTGTAGTTTACAAGCCAGTGACTTTCATACAAAAATTAAACTTCAGATAGCGCGCGTTTAGTCCGAGTTGTATGTTGAGTTGAGCTAATGTTTCTTAGCCTAGCATATGTATGGTAAGTTCGATATCAAGTGAAGCGATCTGCTGGATTTGATCTGCGATCTGCTCGGATCGCTACACCTACCGCAGATTGCCATAGTGCTGTTAGCAGGTCAGTGTGTCAGCGATGTTGGGGGGAAACGGGACAGCCAGAGGGGCTGGACGCTCAGGTAACGGCGCAGGCTTGACCCATCTACAGGTGGGCAGCACATCTGGGGCTTTGGGGGCGGTAAACTCTGCCATAAACCTGCCCGATGGTGGCAGATACGACGACAGGCCGTCGGTTGAGGCTGTGCTGAGCGGCTCTGATGGAGACTCAGATTCCGGGGATGATGAAGAGAGTTCCGTCCTGGACAGGAGAGGAGTGAAGCGGGAGAGGAGTGAGATGGAGGTCGGGGGCTCCTCGGGATCTAATGCTGCACTGTCGGCTGTATATGGAGGAGTTTCCAGCGGGGTGGCTGGTGCAAAACCCGGCAAGAAAACACGAGGAAGGGTGAAAATTAAGATGGAGTTTATTGACAACAAGCTGAGGAGATACACGACCTTCAGCAAGAGAAAGACTGGCATTATGAAGAAGGCTTACGAACTGTCCACCTTAACGGGAACGCAAGTTTTGCTCTTGGTTGCCAGTGAGACGGGCCACGTCTACACATTTGCCACACGGAAACTTCAGCCCATGATCACCAGTGAGACGGGTAAAGCCCTCATCCAGACCTGCCTAAATTCCCCTGATTCTCCACCCCGTACGGACCCTTCAACAGACCAGCGGATGAGTGCCACGGGATTCGAAGAGACGGACCTCACCTACCAGGTCTCGGAGGCTGATGGTCTCACAGAGCCAAAGTGTTGTTTTCAGACTGTTGCGGTAATGAGATTTTTAAGGACTTGTTTTGGAAACTGTGTTCAAAAAGATCTTAAATTGTTTCATTCAGAGCTGCCTGAAATAGCAGTGCTCTCTCGCTGTGTGGACACCTGTTTTCCTGTGAAGGCAGCTGCCGTTCTTGGGATCGGCATGGCACAATTGCCTTTATCACACGCAGTTGTTGCAACAGGCTCTGCTGCGATCAATCAGTCTTGGTCTGCCACAGGAAAACGCTTTGCCATGCACACTCAGAGCAGCGCCCCCTCGCTGTCTGGTACCACCTGTTGGCCGATGAACGCTCAGAGCGTCTCGAGTGCAAACGGCACAGTGCTCAAAAGTTCTCCCGCTGGCGTGATGCAGCTGCCGGGTGGATTCACGCTCATGCCAGGCGCTTCTCTTCCGCCTGGCACACACACTATTCCTCTCAGTCAGCTGCAGACACACTCTCTGGCCATACAGTGTCCACAGACGCAAAACAGCCACGCCATGACTAGCACAACCACCACCGCTGCTGTCCCTGCACACACACAACCCGCCGCACAGGCCACGCTCTTCCGCCTGCCGGCCACTGTCTCGCTTACAGGTGGTGCGATGCCTCAACAGTTACAAGCCATCCAGGTTCACCCCAGCCCTCAAAGCAGTGATAGCAGTCCAGAGATCAGCCAGACCTCCAGCAGCTCCGCTGCAAGTCACACTGCTACTATAGTCACGTCCTCAGTGCCTTCTTCAGTGGCAGGTCACATGATGTACCCTGGAGCGCACGTCATGTATGCTACATCCACCCCTGGTCTTGGTGATGGGGGTCTAACTGTGCTCAATACCTTCCCACAACCACACACTGCAATGCACGTGTCCCACACACAAGCCCAAGATTCAGGTGCAGTTTCTCAGATGTTTCTCACAGCACCTCCAGGAACTGTACAGATCCCAGTTTCAGCCGTTCCGCTACATTCGATGTTAATAAACCAGCAGCCCACTGGTAGCAGCAGTACCACCCTCACGGAGCTGCGGGTGGTTAATTTGGACAATCCCAAAGGAGACTGACCTATAAAACATGAGGCCAGTGTGACTGTTCTCTCACACTGATATTCCAGGGATCACTCATGCCATGTAATCAGACTGCCATTATATTTATTACTGCCTTCTTGCTGCGTGGGGTTCATAAACCCATACATACAGGAATATTGAGGTGTAATGGGACATTTGAAGGGTGATTGCGTCTCCTCATGGACTCATTTTGGTAGGTAGTGTGATAATAGATCATTTTGGTTCACATGTATACACAGACACGCATATTTACTTCAGGATTTCATGGAGACATCTGTTCTATCGCTGCTGGGTGTTCACCTTTTTGCCAAAAGACTCAGATGTTGGACAGTGGTATATGATTGTCCATTATCAGTAAAAATTCAAACCTCTTCGCGGTACCACAGTTGAAGTATCTTCAGTTGAATCTTTCTTTCTTTTAGGAATGCCTCTTCTGATCTAATTTATAATTCATTTTGAGATTGCTTCTTGAAATTGAGTCTTTAGAGGTCAAAAAAATTGATTCTTTCAAGAGTTTATGTTGTGAAGTTAGCCGACCATGACTCCTCAGTGTAGGTTTAATGGTGATTTGTGTGTGCTTCACCCAATTCTGTCATCTTTTTCCAAACTTCATGTCATTTCAAACCTTTTCAACAGTTGTTTTGCAGTGTCTGACCTTCTTTCCATTAAAATAAATGGTGACTGGTGCGGTCAAGCTCCAAAAAGTGCCATTAAAAAATACAGCACATGTTTTTTTGGTCATTTTTAGAGCTAAACAGCCTGTGTACCAATTTATAAGCAGGTTTGGAAAGACAGGAGGGTCAGAAAATGATGGGTGAACTTGCCTTCAAAATAATGCTGGATACTCTTGCACTGCCATCAACACTCACTAGGGTTTTGTCTACAGTTTGAATACCACTGTAGTAAATTAATTTCTTAAACATCATGTCTAAAAAAATATAATTTGTCACCCTAATCACATTCTGAATGGCCTTTGTTACTCCATTAGAATTTCTACGATATCTTAAAATGATCCGATTATTTCAATGTGCTGCTATAATTTGGATTTAGACATGATCAATACTATAACAATATCTGGATAAGATCGCATGTCATTCCATGTTGTAATGCTGTGCCAAACTATACTGTACATGTCAATAGCTGGAGCTGTCAGAAGTCAACTTTTCTGCTTAAAGTCTTCAGGCAACACATGCTTTAGCCACTGTTTAATGATGCTGTAACAGAAAAACACTGGCTCGCGTTTGCACTGCATGACAACGTACCGAAAACGGTGGTGCTGCAGAATCACAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99319 lncRNA upstream 1061 1302221 ~ 1305910 (+) True G87220
TU99452 lncRNA upstream 21694 1278270 ~ 1285277 (+) True G87337
TU99445 lncRNA upstream 56005 1250761 ~ 1250966 (+) True G87331
TU99442 lncRNA upstream 59366 1246986 ~ 1247605 (+) True G87328
TU99440 lncRNA upstream 62040 1244634 ~ 1244931 (+) True G87326
TU99470 lncRNA downstream 7923 1336299 ~ 1336530 (+) True G87355
TU99311 lncRNA downstream 39838 1368214 ~ 1375675 (+) True G87216
TU99324 lncRNA downstream 51305 1379681 ~ 1398822 (+) True G87223
TU99316 lncRNA downstream 78282 1406658 ~ 1409173 (+) True CI01000015_01405454_01407722
TU99487 lncRNA downstream 146734 1475110 ~ 1475479 (+) True G87372
CI01000015_01288157_01300925.mRNA mRNA upstream 5840 1288157 ~ 1301131 (+) True CI01000015_01288157_01300925
CI01000015_01080504_01101091.mRNA mRNA upstream 205588 1080504 ~ 1101383 (+) True CI01000015_01080504_01101091
CI01000015_01020856_01025441.mRNA mRNA upstream 281318 1020856 ~ 1025653 (+) True CI01000015_01020856_01025441
CI01000015_01015968_01016675.mRNA mRNA upstream 290125 1015623 ~ 1016846 (+) False CI01000015_01015968_01016675
CI01000015_01002365_01011214.mRNA mRNA upstream 295696 1002365 ~ 1011275 (+) False CI01000015_01002365_01011214
CI01000015_01349369_01366864.mRNA mRNA downstream 20993 1349369 ~ 1367511 (+) True CI01000015_01349369_01366864
CI01000015_01405454_01407722.mRNA mRNA downstream 76605 1404981 ~ 1408735 (+) False CI01000015_01405454_01407722
CI01000015_01412031_01434518.mRNA mRNA downstream 83655 1412031 ~ 1434518 (+) True CI01000015_01412031_01434518
CI01000015_01580548_01582805.mRNA mRNA downstream 252172 1580548 ~ 1583078 (+) True CI01000015_01580548_01582805
CI01000015_01638133_01646368.mRNA mRNA downstream 307050 1635426 ~ 1646409 (+) True CI01000015_01638133_01646368
TU99556 other downstream 282707 1611083 ~ 1611387 (+) True G87432
TU100157 other downstream 547628 1876004 ~ 1876594 (+) True G87972
TU100381 other downstream 1055640 2384016 ~ 2500594 (+) False G88172
TU100556 other downstream 1183722 2512970 ~ 2513011 (+) True G88328
TU100954 other downstream 1694620 3026680 ~ 3030290 (+) False G88670

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040740 False 2911 mRNA 0.52 8 NC_007133.7 35089031 ~ 35124655 (+)