G88172


Basic Information

Item Value
gene id G88172
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 2384016 ~ 2526510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU100381
AAAAAAAAAAAAAAAGTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCCCGCCTCCTCTACCGCCTCCTCGGCCACCGAAACCACCCCGTCCGCCACCTCGTCCTCCAAAACCACCTCTGCCTCCGAAACCACCCCCTCGGCCGCCCTCTCCCTTGGGCTTAGCATAGTCCAGAGTGACCTTGCTTCCATCAATCTCTCCATCATCCATGGCTTCTTTGGCTGCCTTGCAGTCTTCTTCACTATCGAAGTCTACGAAACCAAAACCTTTTGACGATCCGGTTTCTCTGTCCATGGCAACTCTGGCAGCGACGGCGCCTTCAAAAGAATCTTTCAGAGTCTGATCTGTGGTCTCTTCTGACAGACCTTTGACAAACAGGGTTTTTGTAGGTCCAGAGTTTCCTCTTCCACCGCCTCGCTCTCTCTCGTTCTGACTGTACTCTAATCTGATGCTTCTGCCTTCAATGTCTGTGTTGTTACAATTCTCCAGTGCCTCCTTGGCATCCTCCATGCTCTCAAACTCCAAAAATGCAAATCCCTTCGCCCTGCCGTTGTTCTGTGGTATTCTGATGGACACTGCCTTCTCAAACACACTCTGGAGGGAATCTTCAGTTGCGTTGAATGATAGATTGTTCACGACAAGGACTTTGCTTGTAGAACTAGGGGCTGAATGGGATCTCCCGCCCTGCCGACTCTTTTCTCCTGTGAAGTCAACCATGATAGAACGGCCCTGAACATCTGCTCCTTGTGCCTCCTCCAGCATCTTCTCAGCAATTTCCTCTGTCTTGAACTCAACGTAGGCGATTCCTCTGCTAGAACCGTTGTTGCCCATTGGTACTCTAATATCAACAGCCTGGTCAAAGACTTCCCTCAGTTCATCTTGTGTTATGGAGTACGGAAGGTTCTTTACAAACAAAGTGCGTGAATCTCTCTCCTTTTTGTTTTCCTGGGAGTTCTCCTTGCTTCTCGCCCTGTCGAGTTTCAGCGGCAGACCCATCAGCTTCTTGCCATTGAGCTCTAAAGCCTTCTGCAACTCTTCTTCTGATGAAAAGTCAACGTAGCCAAATTTCTTGGTCCCACCAAGTCGCACGTCCTGAATTTCAAGGCCTTCCTTTGAGAAGAACTTGGAGATTGCAGATTTAAGTTCATCAAAGTCTTTATTTTGGTTCAAGTTGCCCAAAAAGACACTGAAACCCTCGCCATCAGTTTTAACTTTCTTAGCTGGTGGTGTTCCCTTCTCTTTTTTAGTCTCTGCCTTCCTCTTCCCTGGAGTGACAGGGGTTTCTTGTTCCTCGTCGTCGTCGTCATCGTCATCGTCGTCGTCATCATCTTCAGATTCCTCTTTTGCTTTCACCATTCCTGCCTTTTTGGCAGAGGCTTTGGGCGCAGGAGTCGTGTCCATTTCCTCTTCTTCATCATCGTCATCATCATCGTCATCATCCGATTCCTCTTTGGCTGCGGGTGCTTTTGCGGCAAGCACTTTGCCTGCAGGTTTAGCGGCTGCAGCCTTTTTAGGAGGTGGAGCTTCTTCCTCTTCAGATTCATCATCATCGCTGTCTGACTCCTCAGCAGAAGCAGCTTTCTTCGCAGGAGTGGCTTTCTTCGCCGGTGTGGCTTTTGCAGGTGCACCCTTCTTGGGTGGTGGTGCCTCTTCTTCCGATTCATCATCATCACTAGACTCCTCAGCAGGTGCTGCTTTCTTGGCAGGGGTTGCCTTGGCAGTGGGTGCTGCTTTAGCAGGCATGGTCTTCTTTGGAGGAGGAGCTTCCTCTTCAGATTCTTCATCGTCGTCGTCATCATCATCCTCCTCCTGTTTGGCGGCGGCTTTTCCATTTTTTACTGCCTTTACTGGAGCTGCATTCTTCTTTGCTGCAGCTTTGACCGGTGGTGCCTGCTCTTCATCAGTGTCCTCCTCATTGGATTCCTCTTCCACTTCTTTGGGAGGTGGAGGTGCCTTTTTCTTCAAAGGCGTTTTTTTAGTTGCCTTGGCAAGCTTCACCATGACTGAATGTTGTTTTTACTGTAAAGTTCTTAACTGAGAGAGTTGCGCAGGTTATAACCGTTCAGTCA
>TU100376
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCTGATGGAGAAAAAAAAAAAAAAAAAAGAATTTTTTTTTTTTAATTTTACATCATAAAATTT
>TU100377
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCCCCTCTCCCTTGGGCTTAGCATAGTCCAGAGTGACCTTGCTTCCATCAATCTCTCCATCATCCATGGCTTCTTTGGCTGCCTTGCAGTCTTCTTCACTATCGAAGTCTACGAAACCAAAACTGAGGGAGGAAACCGTATTTGGTAAACACTCAGGAGGACAAACAGCAGCAGTTTCTAGATCTAAACTGCTTAAAATGTCTCACATCAGACATGGGTATGTTCCAATATAACATCTGGAAACACCTGTTTAAGTGTGAATTTGAATCTACTTCTCTTGCGAATCCATACACCGCCACTGAACTGACAGAGAGGAGCTCATGAGAAGCAAAAATCATGGTTTGCGAGAGAATCAAACATAGTAGTACCCTTTTGACGATCCGGTTTCTCTGTCCATGGCAACTCTGGCAGCGACGGCGCCTTCAAAAGAATCTTTCAGAGTCTGATCTGTGGTCTCTTCTGACAGACCTTTGACAAACAGGGTTTTTGTAGGTCCTAAATAGAGTGGGTTTAAAAGAAAAAAAAAAAAGTTGGCACTTATATATATATATTTTATATAGAACTTCAGTCAAAAGCAATCTACAAACCAGAGTTTCCTCTTCCACCGCCTCGCTCTCTCTCGTTCTGACTGTACTCTAATCTGATGCTTCTGCCTTCAATGTCTGTGTTGTTACAATTCTCCAGTGCCTCCTTGGCATCCTCCATGCTCTCAAACTCCAAAAATGCAAATCTAGGAGAAAAAAAAAAAAACCCCAACACAAGACATTACACCAGTCCAGTAAGTGGGCAAAAACACCCAAAATGTGCATCCAACTTTATGGCCCGTTCACTACAACATATCTGGTCCAATATTTGATGCAATAAACATTTTACTTGAATGAACGGTTGCTAATGAGTCTATTCAGACCAACATGAAAACCTGCATGCATCAATACAACATTTTACTTAATGTTCTTAGCACTGCGAAGAAAACTGGCCAACCAATCCACCATATTCATTGTAAGAGTGGTAGCAGCCATTAAGTTGAATTTGTCTGGCTTTCAGTATCACTCGCTTTTTTTTTTTTTTGTGTGTATTGGAAAAACAAAGGAAAGAAGCCTTATGTATGCTGCTTGACATTGCAAACTGGTATTTTACAATATTTGAACTTTTAATCGTAAACCCACTGTTTTACAGTGTAAGTGGTTTCATTTGCTAGTTATACTTTGTTATACTAATTTTTTAGCTACAGCAGCTAAAGAAATGGAAGTCTAGCATATAAAGTGTTAACAGCAGTATGAACTGATGGTATATCTATGGACTTTTAAAAGGTAATCAGCGAAACTACCTAGTTCACATTGTTATAGGCGTTTTATTCTATTAAATACCTAAATGTTC
>TU100379
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCCCTCCTCGGCCACCGAAACCACCCCGTCCGCCACCTCGTCCTCCAAAACCACCTCTGCCTCCGAAACCACCCCCTCGGCCGCCCTCTCCCTTGGGCTTAGCATAGTCCAGAGTGACCTTGCTTCCATCAATCTCTCCATCATCCATGGCTTCTTTGGCTGCCTTGCAGTCTTCTTCACTATCGAAGTCTACGAAACCAAAACTTTGACGATCCGGTTTCTCTGTCCATGGCAACTCTGGCAGCGACGGCGCCTTCAAAAGAATCTTTCAGAGTCTGATCTGTGGTCTCTTCTGACAGACCTTTGACAAACAGGGTTTTTGTAGGTCCTAAATAGAGTGGGTTTAAAAGAAAAAAAAAAAAGTTGGCACTTAATTTATATATATATATATAT
>TU100384
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCATCTCTCCATCATCCATGGCTTCTTTGGCTGCCTTGCAGTCTTCTTCACTATCGAAGTCTACGAAACCAAAACTGAGGGAGGAAACCGTATTTGGTAAACACTCAGGAGGACAAACAGCAGCAGTTTCTAGATCTAAACTGCTTAAAATGTCTCACATCAGACATGGGTATGTTCCAATATAACATCTGGAAACACCTGTTTAAGTGTGAATTTGAATCTACTTCTCTTGCGAATCCATACACCGCCACTGAACTGACAGAGAGGAGCTCATGAGAAGCAAAAATCATGGTTTGCGAGAGAATCAAACATAGTAGTACCCTTTTGACGATCCGGTTTCTCTGTCCATGGCAACTCTGGCAGCGACGGCGCCTTCAAAAGAATCTTTCAGAGTCTGATCTGTGGTCTCTTCTGACAGACCTTTGACAAACAGGGTTTTTGTAGGTCCTAAATAGAGTGGGTTTAAAAGAAAAAAAAAAAAGTTGGCACTTATATATATATATTTTATATAGAACTTCAGTCAAAAGCAATCTACAAACCAGAGTTTCCTCTTCCACCGCCTCGCTCTCTCTCGTTCTGACTGTACTCTAATCTGATGCTTCTGCCTTCAATGTCTGTGTTGTTACAATTCTCCAGTGCCTCCTTGGCATCCTCCATGCTCTCAAACTCCAAAAATGCAAATCTAGGAGAAAAAAAAAAAAACCCCAACACAAGACATTACACCAGTCCAGTAAGTGGGCAAAAACACCCAAAATGTGCATCCAACTTTATGGCCCGTTCACTACAACATATCTGGTCCAATATTTGATGCAATAAACATTTTACTTGAATGAACGGTTGCTAATGAGTCTATTCAGACCAACATGAAAACCTGCATGCATCAATACAACATTTTACTTAATGTTCTTAGCACTGCGAAGAAAACTGGCCAACCAATCCACCATATTCATTGTAAGAGTGGTAGCAGCCATTAAGTTGAATTTGTCTGGCTTTCAGTATCACTCGCTTTTTTTTTTTTTTGTGTGTATTGGAAAAACAAAGGAAAGAAGCCTTATGTATGCTGCTTGACATTGCAAACTGGTATTTTACAATATTTGAACTTTTAATCGTAAACCCACTGTTTTACAGTGTAAGTGGTTTCATTTGCTAGTTATACTTTGTTATACTAATTTTTTAGCTACAGCAGCTAAAGAAATGGAAGTCTAGCATATAAAGTGTTAACAGCAGTATGAACTGATGGTATATCTATGGACTTTTAAAAGGTAATCAGCGAAACTACCTAGTTCACATTGTTATAGGCGTTTTATTCTATTAAATACCTAAATGTTC
>TU100385
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCTGATGGAGAAAAAAAAAAAAAAAAAAGAATTTTTTTTTTTTAATTTTACATCATAAAATTT
>TU100374
GTGAAATGACTTGTCTTAAAGGGACTTTGTTAATATCTGGATAATCTGGATTTTTTTTTTTTTTTTTTTTTTTAGTTTAAAAACCACATTTAATCAAAATGGTTCTTTACATTATGAAAAATATGAACTGGAAAAAGAAAAATCCTTAAGTCACAAGCCAAATTTAATGCATACATAAATTTGACATCCTCACAGAGCTGTTGCCTGTCTTCATTATTCAAACCTTTCTTATAGATTTACATCTAAATACTACTAAATAGGCAACAAACTTATGTATACGTTACAATATGCTTTGCACATTAAAAAGGTACTGCACATTAAACTTGCACCTAAAAAGGAAACTAAAAGAAAAAAAAAAAAGAAAAGAAAAAAAAAAAGGGGGGGGTTTAACGAGTGGAGAAACGCACACCAACAAAAGAAGTCAAAAACAAACTTGTACAACATGTACCTAAACCAGCAGAGCATAATTACAACATTCACATTTAATTTTTACGCGGATGGTCGGGACGTCTCAGAGGGATTGGGAGTCACTGTACAGTTACTGATGCTTTCTGGAATGTCCTAGAAATGCTCTGACAAAGTGGACTTAAGCAATGAAAACAGTTCATTCAATTACAGATTTAATCAAACTTAGTCTTCTTTCCTTGTGGCCTGTCCCCAAATCCACCTCGTCCACCTGATGGAGAAAAAAAAAAAAAAAAAAGAATTTTTTTTTTTTAATTTTACATCATAAAATTT
>TU100380
CATCGGTTATGCTCATCTTTGCTCACCCCTTTTAATTTATCTTGCTTTCAAATTCAACTTTTCAAACACTTCCGTGTGCTTTCATACGCTCCCATGCGTTGAACATTGCAGCCAATCACATTCATATCCAATGAGCACGTGAACAACGGCCAATCAGGTGTTTACGAATCTGCTCAACAGCGCTCAAAGGGTCACATTTTTAAAATTTCAGTACCAACTAAGTATCACAGTCAGTACTTTGATACATATAGTCAATATATGCCTACACATCCTTAATGACATTAATGAAGCAACTGGCGTACCCCTTCGCCCTGCCGTTGTTCTGTGGTATTCTGATGGACACTGCCTTCTCAAACACACTCTGGAGGGAATCTTCAGTTGCGTTGAATGATAGATTGTTCACGACAAGGACTTTGCTTGTAGAACTAGGGGCTGAATGGGCTAGAAAACAAGAGTGCTCTTAGCATTCATGATAACACAAAACTAGGACAGATGAGAACTAAAACAGATTTAGTCTAGAGCCAAACTGCAGGAACAGAGACACCTAGATTGCATCATTACTCACATCTCCCGCCCTGCCGACTCTTTTCTCCTGTGAAGTCAACCATGATAGAACGGCCCTGAACATCTGCTCCTTGTGCCTCCTCCAGCATCTTCTCAGCAATTTCCTCTGTCTTGAACTCAACGTAGGCGATTCTGTTGCCGAAGCGGAGGACGTCAGTGAACCATTTGTTTGAAACAATATGCGTTAGAACGCGAACAGTCATGGATTAGTCTTACCCTCTGCTAGAACCGTTGTTGCCCATTGGTACTCTAATATCAACAGCCTGGTCAAAGACTTCCCTCAGTTCATCTTGTGTTATGGAGTACGGAAGGTTCTTTACAAACAAAGTGCGTGAATCTCTCTCCCTTTTTGTTTTCCTGGGAGTTCTCCTTGCTTCTCGCCCTGTCGAGTTTCAGCGGCAGACCCATCAGCTTCTTGCCATTGAGCTCTAAAGCCTTCTGCAACTCTTCTTCTGATGAAAAGTCAACGTAGCCAAATTTCCTTTTGGTCCCACCAAGTCGCACGTCCTGAATTTCAAGGCCTTCCTTTGAGAAGAACTTGGAGATTGCAGATTTAAGTTCATCAAAGTCTTTATTTTGGTTCAAGTTGCCCAAAAAGACACTGAAACCTGAAAATTTAAACCAAGGTAAGATTACCATACCATGACAAAGAAATCCACCTTTTTTCCCCCCTTAAACAGCATCAGAATTCACAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU100381 False 2369 TUCP 0.48 19 2384016 2500594
TU100376 False 423 lncRNA 0.32 3 2392221 2491349
TU100377 False 1749 lncRNA 0.38 4 2392221 2493074
TU100379 False 768 lncRNA 0.41 7 2392221 2526510
TU100384 False 1705 lncRNA 0.37 5 2392221 2493074
TU100385 False 420 lncRNA 0.32 3 2392221 2491349
TU100374 False 738 lncRNA 0.32 2 2485550 2491349
TU100380 True 1261 lncRNA 0.43 3 2493157 2494718

Neighbor

gene id symbol gene type direction distance location
CI01000015_02366085_02370003 NA coding upstream 21746 2365714 ~ 2370475 (+)
CI01000015_02268895_02277023 NA coding upstream 115138 2268615 ~ 2277083 (+)
CI01000015_02012379_02029276 EPHB3 coding upstream 362520 2012379 ~ 2029701 (+)
CI01000015_01688642_01691631 NA coding upstream 700280 1688642 ~ 1691941 (+)
CI01000015_01638133_01646368 HYKK.2, HYKK coding upstream 745812 1635426 ~ 1646409 (+)
CI01000015_02761141_02775710 NA coding downstream 234541 2761051 ~ 2775827 (+)
CI01000015_02776634_02783843 NA coding downstream 249380 2775890 ~ 2783979 (+)
CI01000015_02800104_02818680 NA coding downstream 273594 2800104 ~ 2819375 (+)
CI01000015_02826599_02827203 NA coding downstream 299393 2825903 ~ 2827255 (+)
CI01000015_02846943_02876819 ACAP2 coding downstream 320433 2846943 ~ 2876819 (+)
G88289 NA non-coding upstream 23169 2368833 ~ 2369052 (+)
G88258 NA non-coding upstream 28073 2327393 ~ 2364148 (+)
G88255 NA non-coding upstream 36069 2353508 ~ 2356152 (+)
G88252 NA non-coding upstream 67643 2324356 ~ 2324578 (+)
G88246 NA non-coding upstream 79065 2312877 ~ 2313156 (+)
G88343 NA non-coding downstream 38748 2565258 ~ 2565458 (+)
G88345 NA non-coding downstream 41505 2568015 ~ 2568349 (+)
G88576 NA non-coding downstream 56191 2582701 ~ 2582902 (+)
G88577 NA non-coding downstream 56938 2583448 ~ 2583650 (+)
G88671 NA non-coding downstream 363558 2890068 ~ 2899011 (+)
G87972 NA other upstream 515627 1876004 ~ 1876594 (+)
G87432 NA other upstream 780834 1611083 ~ 1611387 (+)
CI01000015_03011472_03026518 NA other downstream 496486 3011472 ~ 3026636 (+)
G89822 NA other downstream 1765336 4291846 ~ 4314351 (+)
G90622 NA other downstream 2687786 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 2881856 5409997 ~ 5413845 (+)
G90777 NA other downstream 3377584 5744146 ~ 5907461 (+)
CI01000015_02512276_02523824 NA coding downstream 10952 2511546 ~ 2524572 (+)

Expression


Co-expression Network