CI01000015_02800104_02818680


Basic Information

Item Value
gene id CI01000015_02800104_02818680
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 2800104 ~ 2819375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_02800104_02818680.mRNA
GCGTAAACATTGCAAAAGAGGAGTTGTGGGTGGGTTTGACGGTTATGGCAGCACCGCGACCCATTAAAGGGATTCTGAAGAACAAATCCAGTATCAAAGCCCGACCCGAAGAGCCAGTCCAGGACACCCCAGAACCAGCACCCCCTATAAACTCTGAAGACGACCAACAGAAGAAGTCACAGAAATGGGATGAAATGAACATTTTGGCCACATATCACCCGGCAGATAAGGACTATGGGCTGATGAAGATAGACGAACCCAGTACGCCATACCACAGATATGTTACTGCCCTGTCTGCAAAATACAAGGGCAGCACTGAGGGTGCAACTCAATATGACAGGGCAAATTTGCAGAAAAGGATGGTCGGTGATGACGAAGATGAGGGGGCGCTCAGCGATTCAGACGGGAACACAGTCCTACCCGGAGACGACCTCGCTAAGAAGATACAGCCTTTTGAAAATGTCCACTCTGAGGGTGTGGATGATGCTTGCACACAGTGGCAGTATCAGGAGGACGCTGATCCTCCTTTTCCACCAGAATTGTTCGCCTTCTGGAGCCAGAGCCTGTGCTCGTGTAGGCAAACTAGAGCCCGTCACCAACCGGTCGCGTGTTTCCATAGACTTGAGGAACGAACGCTGATGTACGTGTATTATATGCTCCCCTACCCATCAGTCATTGAGGCCATTGTGCGTGAGCTGGCGGCAGCAGTGGAGGGCGCAGAATCTCGCTTCATGGAGGAACCAGAAGAGGAGAGCAGTGAGGAAGATGAGGAGGAGTTGAGTCCAGAGGATCAAGGACAATACCTGCTCTTATGGCTGTCATCACTGTCAGTAATGACCATTGGAATGAACTGAAAGCGATGATGAGCAAAAAATAGGGCTAAGAGACAAAACCTCCTACAACAACTTGCAGTCCTGCATATCGAGGCTGAGAAAAGAACGCCGCAGATAATGGTGACAGGTAAATGCCGTGAACATTAGCTTTCTATATGTTTATGTGCCGTTAACATTATCTTTTTGTTAATTTGTGGAGTATGTAAACTGTGCACATCAGCACCTGATTTGGTAGTGCTGGGGGGATTTTTAGTCATAATGTTTTTCTTGATTACACATCTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTAATTACTCATGTCGTTCCACACCCGTAAGACCTTCATTTATCTTTGGTACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCCTCCACTGACAGCAAGTTAATTTCATTTTGTTCTGAAGATGAAAAGTCAAATTGAATTCTATACACTAAAAAATGTTTCAATGCTAAAAGTGTGCATGCTGCCTTAAAATTGCAAATTTAGTCAACTTAAAATGAAATTGTAGTAAGATTTAAGTTAACTTTAGGAAAATTATTCTGATGCTAATTAAGTTGTTGTGATAGCTAATTGTAACAATTTTTTTTTTAATATAAATTCAGAATAGGCAGTTGTTGCTCCCATTTTAAAAATAATAAGCCTATTACCAAGCATTCTTTTCATACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_02800104_02818680.mRNA True 1549 mRNA 0.43 8 2800104 2819375

Neighbor

gene id symbol gene type direction distance location
CI01000015_02776634_02783843 NA coding upstream 16125 2775890 ~ 2783979 (+)
CI01000015_02761141_02775710 NA coding upstream 24277 2761051 ~ 2775827 (+)
CI01000015_02512276_02523824 NA coding upstream 275532 2511546 ~ 2524572 (+)
CI01000015_02475219_02478793 B3GNT7 coding upstream 321248 2474987 ~ 2478856 (+)
CI01000015_02452032_02454972 NA coding upstream 345011 2451584 ~ 2455093 (+)
CI01000015_02826599_02827203 NA coding downstream 6528 2825903 ~ 2827255 (+)
CI01000015_02846943_02876819 ACAP2 coding downstream 27568 2846943 ~ 2876819 (+)
CI01000015_02905712_02913298 HTR2B coding downstream 86062 2905437 ~ 2913590 (+)
CI01000015_02969241_02987416 TTC14 coding downstream 149866 2969241 ~ 2987695 (+)
CI01000015_03011472_03026518 NA coding downstream 192097 3011472 ~ 3026636 (+)
G88577 NA non-coding upstream 216454 2583448 ~ 2583650 (+)
G88576 NA non-coding upstream 217202 2582701 ~ 2582902 (+)
G88345 NA non-coding upstream 231755 2568015 ~ 2568349 (+)
G88343 NA non-coding upstream 234646 2565258 ~ 2565458 (+)
G88172 NA non-coding upstream 273594 2384016 ~ 2526510 (+)
G88671 NA non-coding downstream 70693 2890068 ~ 2899011 (+)
G88693 NA non-coding downstream 88403 2907778 ~ 2909634 (+)
G88712 NA non-coding downstream 228065 3047440 ~ 3172378 (+)
G88745 NA non-coding downstream 366462 3185837 ~ 3186144 (+)
G88746 NA non-coding downstream 366779 3186154 ~ 3186396 (+)
G87972 NA other upstream 923510 1876004 ~ 1876594 (+)
G87432 NA other upstream 1188717 1611083 ~ 1611387 (+)
G89822 NA other downstream 1472471 4291846 ~ 4314351 (+)
G90622 NA other downstream 2394921 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 2588991 5409997 ~ 5413845 (+)
G90777 NA other downstream 3084719 5744146 ~ 5907461 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021351 ppp1r2 coding NC_007133.7 CM002906.2 37804781 ~ 37834312 (-)