G88693


Basic Information

Item Value
gene id G88693
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 2907778 ~ 2909634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU100981
CATTTCAAGCTTTCTATAGACCAGTGTTAATTTTGTTGACAAGTAATTTGTGTAGGTTTAGTTGACTAAAATCGTATATTTAGTCGACTAAAACTAAAACAATTCAGATGACTAAAATATGACTAAAACTAAAAGGCATTTTGGTCAAAAGACTACGACTAAAGATAAATCAAAATTTGCTGTCAAAATTAACACTGCTGTAGACATAGAATATGCCTGTGAGGCAAGTATATGCTTGGTTGAGCATGTATTTCAGCTCATTTTTTTGAAGTGCTTCAAAGTAGTTCATGGAGAACGAGATGCAGAAAGCGCATCCTTTTTGTGTTTGTTGTTTTTTTGTGACGTGCTTTAAAGTAATTCACAGAGACCAAGTTTGTTTTTTTATTTTTGACCATTCAAGCGCAATAATCTGCAAAATAGATTTGTCTGAAAGGCGACGTTATGTGTGCACGCTTGTGGTCATGCATGTTGCATGTCAGCACTTAATCTTTTTCGAGGCTTACTGCACTTAATTCTTAATATCAAACACGTCCTGCGCTTTATTTTCTTAATTAAATTATTTTTAGATTTGAATCTATTGAGTAACAATAGCCGTTTGGTTAAAAAAGGTTTATTGTCATTGGGGAAATTAAATCTAAATGTAATTAATTCAACCTATACTGCCCAACTGCTTCACATACTGGATAAAAATAATATATTCAAATTTTACCAGCAATAGCAAGGTAGTAACACCGCTCAGTTCACGCACAAAAATACAGAATAGTGTCATCTAATGCATTTAATACATTGGACTCATACTGATTAAATCAATTCAGATCCAATATGACTGTTAAAAACATGCTGGATTGAGAAAGCTTCAAAAAGCCCAGCTGGCAATAATGTACCCTCTGAGAAGCTTCTATGAAGATCTGTTTAGAAAAGAGGACTGATCTCGCTAATACCAGTTTTCAACATCTGGTTAAGGGTTCTCCAAACCATGGAGGTCTGCTCATACCACACGTTTGGAGAAACACTGTAGTTTAGGTCCATGCAAGCTAAAAATCATGTTTGAAAATGTATATACATCAAAAGAGCTTCAACAAAGGGCAGGTTTGCTCAACTTATCAAAATATTTGTTGACAGTTTTATAATTAACTTATTGAAGAATGTTACTAAATGTATAATTTTACCCTCTTTTTCACTTCTTGTCATGGGAGCATAAAGTCATGGTATCCAGCTACAGGGAAAATATCGGTATGTAATTTTTCAAATGGTACGATATCATGAATTTGCTCATTTCGGTACTTGATACATTGTTGTTCCGAAGTTCACCGTTAGGTAGCAGTTGTGCTACCCAAACTGACACAAAACCGGCAAAAGTGACAAAGAAAAACAAAATGGATAAAGTCAAGGAAAAGGCTTATCTTATCAAACAGCTAAATGTGTTGCTAATGTTACACAAACCATGTTCCCATTTGTCATCTCAGAGTCAGACAGCTGTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAATCTGTATCCTTAGAAACACTTAGAACACTTATATTGCTAATTCTACCCGATTTTTCATATCAACAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100981 True 1581 lncRNA 0.34 2 2907778 2909634

Neighbor

gene id symbol gene type direction distance location
CI01000015_02846943_02876819 ACAP2 coding upstream 30959 2846943 ~ 2876819 (+)
CI01000015_02826599_02827203 NA coding upstream 80523 2825903 ~ 2827255 (+)
CI01000015_02800104_02818680 NA coding upstream 88403 2800104 ~ 2819375 (+)
CI01000015_02776634_02783843 NA coding upstream 123799 2775890 ~ 2783979 (+)
CI01000015_02761141_02775710 NA coding upstream 131951 2761051 ~ 2775827 (+)
CI01000015_02969241_02987416 TTC14 coding downstream 59607 2969241 ~ 2987695 (+)
CI01000015_03011472_03026518 NA coding downstream 101838 3011472 ~ 3026636 (+)
CI01000015_03042640_03045708 NA coding downstream 131979 3041613 ~ 3045874 (+)
CI01000015_03146304_03147242 SOX2, SOX2.L coding downstream 233977 3143611 ~ 3147739 (+)
CI01000015_03373445_03409681 ATP11B coding downstream 463811 3373445 ~ 3410965 (+)
G88671 NA non-coding upstream 8767 2890068 ~ 2899011 (+)
G88577 NA non-coding upstream 324128 2583448 ~ 2583650 (+)
G88576 NA non-coding upstream 324876 2582701 ~ 2582902 (+)
G88345 NA non-coding upstream 339429 2568015 ~ 2568349 (+)
G88343 NA non-coding upstream 342320 2565258 ~ 2565458 (+)
G88712 NA non-coding downstream 137806 3047440 ~ 3172378 (+)
G88745 NA non-coding downstream 276203 3185837 ~ 3186144 (+)
G88746 NA non-coding downstream 276520 3186154 ~ 3186396 (+)
G88749 NA non-coding downstream 278396 3188030 ~ 3188263 (+)
G88768 NA non-coding downstream 308140 3217774 ~ 3218022 (+)
CI01000015_02512276_02523824 NA other upstream 391349 2511546 ~ 2524572 (+)
G88172 NA other upstream 407184 2384016 ~ 2526510 (+)
G87972 NA other upstream 1031184 1876004 ~ 1876594 (+)
G87432 NA other upstream 1296391 1611083 ~ 1611387 (+)
G89822 NA other downstream 1382212 4291846 ~ 4314351 (+)
G90622 NA other downstream 2304662 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 2498732 5409997 ~ 5413845 (+)
G90777 NA other downstream 2994460 5744146 ~ 5907461 (+)

Expression


Co-expression Network