CI01000015_03373445_03409681 (ATP11B)


Basic Information

Item Value
gene id CI01000015_03373445_03409681
gene name ATP11B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3373445 ~ 3410965 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_03373445_03409681.mRNA
GGCTTTGACCCTCCCCATCAGAGTGACACGCGCACAGTTTACATAGCAAACAAGTTCCCACAGCATGGCCATTATATTCCTCAGAGGTTTGCAGACAACAGGATCATTTCCTCCAAGTACACCATATGGAACTTTGTCCCCAAGAATTTGTTTGAGCAGTTCAGAAGAATTGCCAATTTTTATTTTCTCATCATCTTCTTGGTTCAGTTAATGATAGACACACCCACTTCCCCTATAACCAGTGGACTTCCCCTGTTTTTTGTCATCACAGTAACTGCCATCAAACAGGGATTTGAAGATTGGCTGCGGCACAAAGCTGATAATGAAGTGAACGGAGCACCTGTATTTGTTGTGCGCAGCGGCAGTCTGGTCCAGACCCGATCCAAGAATATCCGAGTAGGTGATATTGTGAGAGTAGCCAAAGATGAGACGTTTCCTGCAGATCTGGTTCTCTTATCATCAGACCGGGCCGAGGGGACGTGCCACATCACCACTGCCAGCCTGGACGGAGAGACTAACCTGAAGACCCACTATGCGGTGCCAGAAACGGCTGTGTCCCAGTCGGTGTCGCGGCTGGAATCTCTGCAGGCGGTGGTGGAGTGTCAGCAGCCGGAAGCTGATTTATACAGCACATTCTTGCTTATCAGGTTTGTCGGGAGAATAACAGTAACCCAACAAGGAGAGGAGATAGTCAGATCCATGAATACATTTCTCATCATCTACTTGGGCATTCTGCTGTTTGAAGCCATCCTCAGCACGATTTTGAAGTACGCTTGGCAGGCAGAGGACAAGTGGAATGAGCCATTTTACAATCAGAAGACTGATCAAGAGAGAAACAGCAGCCAGATTTTGAAGTTTATTTCTGACTTCCTGGCTTTCCTGGTCTTGTACAACTTCATAATCCCAATCTCGCTATATGTGACTGTTGAGCTGCAGAAGTTTCTGGGCTCTTTTTTCATTTGTTGGGACTTGGATCTGTACCATGAAGAGAGTGACCAGAAGGCTCAAGTCAACACATCAGACCTCAATGAAGAGCTGGGCCAGGTGGAGTATGTTTTCACGGACAAAACGGGAACCCTCACTGAGAATGAGATGCAGTTTAGGGAGTGTTCCATCAACGGTATCAAATACCAGGAGATCAATGGGAAGCTTGTGCCTGAAGGAATGACAGAAGATTCACCAGACGGATCGAACAGGGAAGAGGAGTTGTTCCTGAAAGCCGTCTCACTGTGTCACACAGTGCAGATCAGTTATGATCAAACAGATGGGCCGGGAGACCCGTTCTCGCATGCCAATGGCTTCTCGCCTCAGATGGAGTATTATGCCTCCTCTCCTGATGAGAAAGCACTAGTGGAAGCTACCAAGAGGATGGGTGTTACATTCATAGGAAGCCATGGAGAAAACATGGAGATTAAAACATTTGGAAAAGCAGAGAAACCGCAGGAGAATGAGCGTGATACTGCAGACACCCTCAGGCATGTGTCTCTGAACACTCATGTGCTGTTTATCATTGAACAGCATAGTTACCTAATGATGTGCCGTCTCTCATTAGGTGAAAAGGTGCTATTTACAAAAGGAGCTGAATCAGCCGTCCTCCCCTACACCAAGAGCGGCGAGATCGATAAAACCAGAGTCCATGTGGATGAGTTTGCTCTGAAGGGTTTGCGGACATTAGTGGTGGCCTGCAGACACTTCAGTGCGGATGAGTATCAGGAAGTGGACCGGCGGCTCCATGAAGCCAGGACGGCTCTGCAACAGAGAGAGGAACGACTAGTTGAGGTCTTCAACTTCATTGAGAAAGACCTGGAGCTGCTGGGAGCAACTGGGGTGGAGGACAAGCTGCAGGACAAGGTTCAGGAGACGATTGAAGCTCTGCGATTGGCTGGGATCAAGGTATGGGTGTTGACAGGCGACAAGCATGAGACAGCGGTTAGCGTGAGCCTCTCCTGTGGTCATTTCCACCGCACAATGAACATCCTGGAGCTCGTGCAGCAAAAAACAGACAACGAGTGTGCTGAGCAGCTCCGCAGACTAGCCAGGAGGATCAAAGAGGATCATGTGATCCAGCACGGGTTAGTGGTAGACGGGGCAAGTCTTTCTCTGGCTCTGCGGGAACATGAGAAACTCTTCATGGAGGTGTGTAAGAACTGCTCGGCGGTGCTCTGCTGCAGAATGGCACCTCTCCAAAAAGCCAAGGTGGTGAGACTGTTGAAGACTTCCCCAGAGAAGCCCATTACATTAGCCATCGGAGATGGAGCCAATGATGTCAGCATGATCCAAGAGGCTCACGTTGGTATTGGAATCATGGGCAAAGAAGGAAGACAAGCCGTAAGAAACAGCGACTATGCAATCGCGAGGTTCAAGTTCCTCGCCAAATTGCTGCTTGTACATGGCCATTTCTACTACATTAGAATAGCAACCCTTGTGCAATACTTTTTCTACAAGAATGTGTGCTTTATCACTCCCCAGTTTTTATACCAGTTCTTCTGTTTGTTCTCACAGCAAACTCTTTATGACAGCGTGTATCTGACGCTGTATAATATTTGCTTCACCTCTCTGCCCATACTGGTATACAGTCTGTTTGAACAGCTGGTGCATCCACATGTTCTGCAGAGTAAACCAGCACTTTACAGAGACATCAGTAAAAATTCCCAGCTCTCCTTTAAAACCTTTTTGTACTGGACCTTCCTGGGCTTCTGCCACGCCTTCGTCTTCTTCTTTGGGTCCTACATCCTGATGGGAGAAGACACCACGCTGATGGGAAACGGACAGATTTTGCGAGCTAACAGGCAACTGATGTTCGGAAACTGGACGTTTGGCACTTTAGTATTCACTGTGATGGTTATTACGGTAACGCTGAAGCTGGCCTTAGAGACACATTTCTGGACGTGGATGAATCACTTTGTCACATGGGGCTCCATCGCCTTCTACTTCATCTTCTCCTTGTTTTATGGCGGCATCATCTGGTACTGTATTGCCGATGTCATCAAGAAAGTCTTTTACAGGCACCTGCACCCAACCAGCACGCAGAAATCTCAGATGTACACCAACCGTGTGGCTATAGGTGATGACTTCATCGCACTTCAGCCTCTGTCCAGAGCCAAGAATCAGCTGGGCAAGATTAGAGGGGCAAAACGCCTGCTCACGGCTGGGCCGGCTGGTGGAGCGAATAATGGGCCGATGCGACCCCGCTCGGGCCACAAGAACACTGCCACTGAAGAGCAGGGTACTAGTGAAGACCTCTGCTCTGACTGGCCAATGGTAGCCACGGTCAAAAGCTACCGCCGCTGTGATCGGCTCATTTATTGCAAAGGCAAAATCAACAAGGGACCATATCATGAGTGAGTGAGACACTGGTAACTGTAGTCTCCAAGAGGATTTTTGAATTGCTTTTGTAATTTTAAACTTGAAGCCTTACGGAAGTCAAATCAGTCTGTCTAACTGCATGGAGGCAGCATTTCATATTCAGTGTGTTAAGTGGTCGGTGAATGCCAGAGTGTCTGTTCTACCTAGACAGTTTACTCTGCTTTATCGCTGTTCGTTTACCCTGTTTTTCCATCTCCGTCTTGTCTATCTCAAATGAAGCTTCTAAACAATTATACATTGTTTCATTTATCAGTGATCTGTACTGCTTTTCTTCCATTTGTCTTCAGACTAGTGGTTCTCAACTGGTAGGACACGGTGTGTCCAAAACTGGGTTACATGTTGCGGTTTTAAATTTGTAATAGGAAAGATAAACATTTCCCATATCGTTGGAGCTTATGGCTTTGTGAGCCGCACTTCATGTAGCACTATTTGCGCTTCAGACAATCTGAGTTTGAGTCCCGGCTCATAGACTTTTACTGATCTCGTCTCCCACTTTGCTTCCTGCCAATTCTCTATACAGCAATGTCACAATACAGGCAAAAATGGCAAAAATAAATTTTAAAAAACACACTTCCCATTTCTTATATGTCTGTGCATCAGACGTCATGCCCACAGACCGTTGGCTGAACATCTGATGCATTATGGCACACAAATTTGAAAACACTTCAGTTTCGAAGTCGTCATCTGGTTGGTTGAAAGATGCTGTGATGCCAAACCCCCTTATGGAAAAAGCAAGCTGTTGTGTTTACAACTGTGACAATGAGCACTTATCAGGATCTAAATGCTGGATTTTTAAAATTATGTGAAGTATGTAAAGTTTGTGGCATAGACTCTTTAAAATACGTCCAAGTGTTTTACACACCGTTCTGTTATTGTAGGGACATCGGCATTGCATTTTCAAGCCCCTAAACATGACGCAGAACAAAACAAACTTTGATTGGCTGCTTTACATGTCAGTCAGACGGCCTCTTGGGCATTCCTTGGCCAATGAAAGCCCAGACCTTTTGCCGTCAGTCTGAAGGTCTGGCTACGCAAGAGTAGGCAGACGCCAGCATGCCCTCATCCTCCAAAACAAGCAGTGTTTCTTTACCCTTGCGTAGCTTTGTTCAATGTGCTTTTGTATGATTTTGGCACTTGGGTCATCACTTGATGTCCACAGCAAAACCAGTTGAGAACCACTGCTTTAGACAATGAAAGAGATTGTTTACTATGGTATGAAGTCAGTAAGCCACATTTACCGTGAATATACATACATTTAATCAA

Function

symbol description
atp11b Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; inner ear; swim bladder; and ventricular system. Orthologous to human ATP11B (ATPase phospholipid transporting 11B (putative)).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_03373445_03409681.mRNA True 4629 mRNA 0.46 28 3373445 3410965

Neighbor

gene id symbol gene type direction distance location
CI01000015_03146304_03147242 SOX2, SOX2.L coding upstream 225706 3143611 ~ 3147739 (+)
CI01000015_03042640_03045708 NA coding upstream 327571 3041613 ~ 3045874 (+)
CI01000015_03011472_03026518 NA coding upstream 346809 3011472 ~ 3026636 (+)
CI01000015_02969241_02987416 TTC14 coding upstream 385750 2969241 ~ 2987695 (+)
CI01000015_02905712_02913298 HTR2B coding upstream 459855 2905437 ~ 2913590 (+)
CI01000015_03452576_03457978 NA coding downstream 40691 3451656 ~ 3458031 (+)
CI01000015_03460997_03462972 CART1 coding downstream 50032 3460997 ~ 3462998 (+)
CI01000015_03464878_03470145 NA coding downstream 52172 3463137 ~ 3470675 (+)
CI01000015_03482829_03494230 NA coding downstream 71864 3482829 ~ 3494230 (+)
CI01000015_03498502_03512450 ACY1 coding downstream 87537 3498502 ~ 3512882 (+)
G88820 NA non-coding upstream 6986 3295239 ~ 3366459 (+)
G88860 NA non-coding upstream 31845 3339847 ~ 3341600 (+)
G88833 NA non-coding upstream 71119 3287630 ~ 3302326 (+)
G88783 NA non-coding upstream 120293 3252900 ~ 3253152 (+)
G88775 NA non-coding upstream 141039 3231932 ~ 3232406 (+)
G88866 NA non-coding downstream 38659 3449624 ~ 3449940 (+)
G88826 NA non-coding downstream 55942 3466907 ~ 3467408 (+)
CI01000015_03592958_03598421 NA non-coding downstream 172757 3586556 ~ 3600514 (+)
CI01000015_03608694_03649223 KLC4 non-coding downstream 234027 3608376 ~ 3649223 (+)
CI01000015_02512276_02523824 NA other upstream 857016 2511546 ~ 2524572 (+)
G88172 NA other upstream 872851 2384016 ~ 2526510 (+)
G87972 NA other upstream 1496851 1876004 ~ 1876594 (+)
G87432 NA other upstream 1762058 1611083 ~ 1611387 (+)
G89822 NA other downstream 880881 4291846 ~ 4314351 (+)
G90622 NA other downstream 1803331 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 1997401 5409997 ~ 5413845 (+)
G90777 NA other downstream 2493129 5744146 ~ 5907461 (+)
CI01000015_06054566_06083712 NA other downstream 2652817 6054452 ~ 6083969 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021343 ATP11B coding NC_007133.7 CM002906.2 36944527 ~ 37007365 (-)