G88783


Basic Information

Item Value
gene id G88783
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3252900 ~ 3253152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU101082
GTGCTCCTCAAACCATTCCTGAATCAATTTTGCTTTGTGGCAGGGCGCATTATCCTGCTGAAAGAGGCCACAGCCACCAGGAAATACCGTTTCCATGAAAGGGTGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACATGTCAAAGTAGCATCCACATGGATGGAAGGACCCAAGGTTTCCCAGCAGAGCATTGCCCAAAGCATCACACTGCCTCCGTTGGCTTGCCTTCTTCCCATAGTGCATCCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101082 True 253 lncRNA 0.50 1 3252900 3253152

Neighbor

gene id symbol gene type direction distance location
CI01000015_03146304_03147242 SOX2, SOX2.L coding upstream 105161 3143611 ~ 3147739 (+)
CI01000015_03042640_03045708 NA coding upstream 207026 3041613 ~ 3045874 (+)
CI01000015_03011472_03026518 NA coding upstream 226264 3011472 ~ 3026636 (+)
CI01000015_02969241_02987416 TTC14 coding upstream 265205 2969241 ~ 2987695 (+)
CI01000015_02905712_02913298 HTR2B coding upstream 339310 2905437 ~ 2913590 (+)
CI01000015_03373445_03409681 ATP11B coding downstream 120293 3373445 ~ 3410965 (+)
CI01000015_03452576_03457978 NA coding downstream 198504 3451656 ~ 3458031 (+)
CI01000015_03460997_03462972 CART1 coding downstream 207845 3460997 ~ 3462998 (+)
CI01000015_03464878_03470145 NA coding downstream 209985 3463137 ~ 3470675 (+)
CI01000015_03482829_03494230 NA coding downstream 229677 3482829 ~ 3494230 (+)
G88775 NA non-coding upstream 20494 3231932 ~ 3232406 (+)
G88769 NA non-coding upstream 33720 3218846 ~ 3219180 (+)
G88768 NA non-coding upstream 34878 3217774 ~ 3218022 (+)
G88749 NA non-coding upstream 64637 3188030 ~ 3188263 (+)
G88746 NA non-coding upstream 66504 3186154 ~ 3186396 (+)
G88833 NA non-coding downstream 34478 3287630 ~ 3302326 (+)
G88820 NA non-coding downstream 42087 3295239 ~ 3366459 (+)
G88860 NA non-coding downstream 86695 3339847 ~ 3341600 (+)
G88866 NA non-coding downstream 196472 3449624 ~ 3449940 (+)
CI01000015_02512276_02523824 NA other upstream 736471 2511546 ~ 2524572 (+)
G88172 NA other upstream 752306 2384016 ~ 2526510 (+)
G87972 NA other upstream 1376306 1876004 ~ 1876594 (+)
G87432 NA other upstream 1641513 1611083 ~ 1611387 (+)
G89822 NA other downstream 1038694 4291846 ~ 4314351 (+)
G90622 NA other downstream 1961144 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 2155214 5409997 ~ 5413845 (+)
G90777 NA other downstream 2650942 5744146 ~ 5907461 (+)
CI01000015_06054566_06083712 NA other downstream 2810630 6054452 ~ 6083969 (+)

Expression


Co-expression Network