G88749


Basic Information

Item Value
gene id G88749
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3188030 ~ 3188263 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU101048
AGGGGACAAAATGTTTGTTTTGTGCCCTGGGCCCACTGTTGCTGCACCCATGCCAAACGCCATTCTCATGGTGAACAAATTAAAAAACATACATTTTCAAAAAGAGAGCAAATTTCCTCTTCCACACTCGTCTGTGCACAGGTCCCAACACAGCGGCCTGTCAACCGACTTAATCCAACCCCTTGGGCCGAGGCTTGGCAGGCCATCCCCGGAGTGTCAAGCTGGGTGTTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101048 True 234 lncRNA 0.52 1 3188030 3188263

Neighbor

gene id symbol gene type direction distance location
CI01000015_03146304_03147242 SOX2, SOX2.L coding upstream 40291 3143611 ~ 3147739 (+)
CI01000015_03042640_03045708 NA coding upstream 142156 3041613 ~ 3045874 (+)
CI01000015_03011472_03026518 NA coding upstream 161394 3011472 ~ 3026636 (+)
CI01000015_02969241_02987416 TTC14 coding upstream 200335 2969241 ~ 2987695 (+)
CI01000015_02905712_02913298 HTR2B coding upstream 274440 2905437 ~ 2913590 (+)
CI01000015_03373445_03409681 ATP11B coding downstream 185182 3373445 ~ 3410965 (+)
CI01000015_03452576_03457978 NA coding downstream 263393 3451656 ~ 3458031 (+)
CI01000015_03460997_03462972 CART1 coding downstream 272734 3460997 ~ 3462998 (+)
CI01000015_03464878_03470145 NA coding downstream 274874 3463137 ~ 3470675 (+)
CI01000015_03482829_03494230 NA coding downstream 294566 3482829 ~ 3494230 (+)
G88746 NA non-coding upstream 1634 3186154 ~ 3186396 (+)
G88745 NA non-coding upstream 1886 3185837 ~ 3186144 (+)
G88712 NA non-coding upstream 15652 3047440 ~ 3172378 (+)
G88693 NA non-coding upstream 278396 2907778 ~ 2909634 (+)
G88671 NA non-coding upstream 289019 2890068 ~ 2899011 (+)
G88768 NA non-coding downstream 29511 3217774 ~ 3218022 (+)
G88769 NA non-coding downstream 30583 3218846 ~ 3219180 (+)
G88775 NA non-coding downstream 43669 3231932 ~ 3232406 (+)
G88783 NA non-coding downstream 64637 3252900 ~ 3253152 (+)
G88833 NA non-coding downstream 99367 3287630 ~ 3302326 (+)
CI01000015_02512276_02523824 NA other upstream 671601 2511546 ~ 2524572 (+)
G88172 NA other upstream 687436 2384016 ~ 2526510 (+)
G87972 NA other upstream 1311436 1876004 ~ 1876594 (+)
G87432 NA other upstream 1576643 1611083 ~ 1611387 (+)
G89822 NA other downstream 1103583 4291846 ~ 4314351 (+)
G90622 NA other downstream 2026033 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 2220103 5409997 ~ 5413845 (+)
G90777 NA other downstream 2715831 5744146 ~ 5907461 (+)
CI01000015_06054566_06083712 NA other downstream 2875519 6054452 ~ 6083969 (+)

Expression


Co-expression Network