LOC110489806 (if36)


Basic Information

Item Value
gene id LOC110489806
gene name if36
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41239892 ~ 41285762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562732.2
AAAGTGACGCTGATTGGTCATTTACGTAACACGTTCTCGAATCTACTTCCTCTTCTCTCGCAGTGAAAATGGCGGAGTACGACCTCACCACCAAAATTGCCCATTTTTTGGACAGACATCTCGTCTTTCCTTTGCTGGAATTCCTTTCTGTCAAAGAGATCTACAATGAGAAGGAACTGCTTCATGGAAAATTGGATCTCCTTAGCGAGACCAACATGGTGGACTTTGCCATGGATGTTCACAAAAACCTCTTCCCTGAGAAAGAGATCCCCGCCACCCTAAAGGAGAAGAGGATCACTGTGGTGGCTCAGCTGAAGCAGCTGCAGGGTGAGACGGAGCCCATTGTGAAGATGTTTGAGGACCCAGAGACCACAAAACAGATGCAGTCAACCAGGGATGGACAGGCCCTTTTTAACTATCTGGCGGAGAAACACAGCTTCCGTCAGGAGTACCTGGACACTCTGTACAGATATGCCAAGTTCCAGTACGAGTGTGGAAACTACTCTGGGGCTGCCGAGTACCTCTACTTCTTCCGTGTCCTGGTCCCGGCCACAGACAGGAATGCCCTGAACTCCCTGTGGGGGAAGCTGGCCTCTGAGATCCTGATGCAGAACTGGGAGGCTGCGATGGAAGACCTCACCCGCCTGAGGGAGACTATCGATAACAATTCGGTGAGCTCCCCCCTCCAGTCTCTTCAGCAGAGGACCTGGCTGATCCACTGGTCCCTATTCGTCTTCTTTAACCACCCCAAAGGCAGAGACAACATCATTGAGCTCTTCCTGTATCAGCCACAGTACCTCAACGCCATTCAGACCATGTGCCCACACATCCTGCGTTACCTGACCACTGCTGTCATCACAAACAAAGACGTTCGCAAGCGGCGGCAGGTCCTGAAAGATCTGGTCAAGGTCATACAGCAGGAGTCCTACACCTACAAAGATCCCATCACAGAGTTTGTGGAGTGCCTGTATGTAAACTTTGACTTTGACAGCGCTCAGAAGAAACTGAGGGAGTGTGAGTCGgTGCTTGTGAATGACTTCTTCCTGGTGGCTTGCCTGGAGGACTTCATTGAGAATGCCCGTCTGTTCATCTTTGAGACTTTCTGCAGGATCCACCAGTGCATCAGCATCAGCATGCTGGCAGACAAGCTGAACATGACCCCCGAGGAGGCGGAGAGGTGGATTGTCAACCTTATCCGCAACGCCAGGCTGGATGCCAAGATAGACTCCAAACTGGGTCACGTGGTGATGGGGAACAACGCTGTGTCGCCGTACCAGCAGGTGATTGAGAAGACAAAGAGCCTGTCCTTCAGGAGCCAGATGCTGGCCATGAACATCGAGAAGAAGATGGCCCATGCCAGCAGGAACGAGACACCCAACTGGGCAGGTCAAGAGACTGGCTTTTAGCAAGACACCACCGAGAATGTTTTTATTCCTGTTTCTACACAGCATTCCCATCCAGCAACAACatcctgtttttttttctgtttttttctgcTTGTCCCTCAAGGAGCAGaggatttttttcccccccctTGGTTCAAGTCATCAGTGATTCAATAAAACAGACGTGCAAAAACCA

Function

NR:

description
Eukaryotic translation initiation factor 3 subunit 6

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03250 EIF3E, INT6; translation initiation factor 3 subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562732.2 True 1581 mRNA 0.51 13 41239892 41285762

Neighbor

gene id symbol gene type direction distance location
LOC110489798 LOC106583742 coding downstream 2373 41157008 ~ 41237519 (-)
LOC110489723 NA coding downstream 127912 40928216 ~ 41111980 (-)
LOC110489774 LOC106583729 coding downstream 332758 40867889 ~ 40907134 (-)
LOC110489712 LOC106605066 coding downstream 378698 40854215 ~ 40861194 (-)
LOC110489653 LOC106605072 coding downstream 941559 40224622 ~ 40298333 (-)
LOC110489824 LOC106605057 coding upstream 150865 41436627 ~ 41439816 (-)
LOC110489843 LOC106605054 coding upstream 393870 41679632 ~ 41687533 (-)
LOC110489860 LOC106605053 coding upstream 428507 41714269 ~ 41730507 (-)
LOC110489886 LOC106605049 coding upstream 677960 41963722 ~ 41969950 (-)
LOC110489894 LOC106605044 coding upstream 709175 41994937 ~ 42030841 (-)
G143067 NA non-coding downstream 104540 41130331 ~ 41135352 (-)
G143040 NA non-coding downstream 135935 41103620 ~ 41103957 (-)
G143034 NA non-coding downstream 140730 41098908 ~ 41099162 (-)
G143030 NA non-coding downstream 148838 41090784 ~ 41091054 (-)
G142992 LOC107712493 non-coding downstream 203693 41035577 ~ 41036199 (-)
G143485 LOC106605058 non-coding upstream 8884 41294646 ~ 41361157 (-)
G143537 NA non-coding upstream 93257 41379019 ~ 41379287 (-)
G143545 NA non-coding upstream 106582 41392344 ~ 41392624 (-)
G143551 NA non-coding upstream 114566 41400328 ~ 41400654 (-)
G143735 NA non-coding upstream 381353 41667115 ~ 41667404 (-)
G142918 NA other downstream 376171 40863214 ~ 40863721 (-)
G141363 LOC106605077 other downstream 1474419 39763933 ~ 39765473 (-)
G140879 NA other downstream 2175474 39063862 ~ 39064418 (-)
G140479 NA other downstream 2411697 38827909 ~ 38828195 (-)
G145010 NA other upstream 1421056 42706818 ~ 42707279 (-)
G145767 NA other upstream 1984955 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 2087078 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 2490301 43776063 ~ 43783884 (-)

Expression


Co-expression Network