LOC110490298 (LOC106605170)


Basic Information

Item Value
gene id LOC110490298
gene name LOC106605170
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43776063 ~ 43783884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563612.2
GTTGTGGTGGGGTGGAGTGAATATAGATTCCTATGATAATAGGAATCTCAAACCCTCTGAAGGAGTTGTGTAACATTGTAGCAGCAAGGGGCAGGACTTCCAGTGTGACATTATGGGGAAAGAGGACTATAAATTGAGGGCCACCTCTCAGGCACCTGCAAACAAACAAGCAAGCAGCAAAGCAGAAGACGGCTGGGATAATTTGCCAAAGTGCATTTAAGGATATTCTACTTCACCGTGAGTTCTACAAACAGACCAACAGCAACCATGTCAGCACACACCAGCCTGCTCCTtctcatcactgtgtgtgtgtccatgcaggaAGGATTTGGACTTCCACTGTCAGAGAGGCCTAAGTCCAGTGATCTGGCTCCACCTCACAGAGTGCGGACCAAACGCTGTGCCTGCAACAACCAGCTGGACTCTGAATGCCACTACTTTTGCCATCTTGACATCATCTGGGTCAACACACCAAGTAAGACCACTGTTTACGGCTTGGGCAGCCCTCTGTCACGTCGCCGTAGGTCTGCCGGTCGCTGTGTGTGTGCCGACTCTGACGACCACACCTGCACCAGCTTCTGTCAAGACAGATCTATGGTCAGAGCCTCTGAGAGAGCCAGGGGATGGGCCTTTCCACCCAGGAAGGAAGCAGCCAGGGCCCCTGGGCTTAATGAGCGCTAAACGACATTGTGTGGCAGACAGTAAGGAGTGAAGAGCGAGTACCAGAACAAATGACACTCTAACATGGAGAGGAGCAGAACAAAGGGCTGCTGATAGAGAGATGTGTCACTTGCAGGAAGGCCACAGACCGGTGGGACTGCctgtttgtttgttggtttgCACCTATAAGGAGAGGTTGGAAAACAAAATGGGACAGAGGCCTGAAGACAGAGAATAGACACTAGATCCAAACCTTGAGGGATGGATCAGGCATGATACATACAGGGTATTTGTGCAGCAAAATGTTTGTTAGGGCCAGGAGGGACAAGGATGGTCCATGCTACTGGCAGACTCTGGCCAGGTAGCCGTAGAGGAAAGAACAGTTGATGTGTTTATGCTGGTTGTCTGTGCTCAAAACAGTGGCAGACACATTCTTTCCATCATGACCGCAATGAACAGGGAGAATATGACTGATACGATCATCAAAATTATGTATGAGATAGCCACTATGTTTTTCTCATTATTTTGCCAAACATATTTAATCTCTCCTTTATTTGATTTGTATAATAACAACATATTATGATTGCCATGCAGGTTATTCATCAAGGAAAATGACTGAGGTCATTTAAAGGTGCAATGTTTAggattatacactgagtgtacaaaacattaagaataccttcctaatattgagttgtaaagttgactggatgtcctttgggtggtggaccattcttgatac
>TU168015
ACAAGCAAGCAGCAAAGCAGAAGACGGCTGGGATAATTTGCCAAAGTGCATTTAAGGATATTCTACTTCACCGTGAGTTCTACAAACAGACCAACAGCAACCATGTCAGCACACACCAGCCTGCTCCTtctcatcactgtgtgtgtgtccatgcaggaAGGATTTGGACTTCCACTGTCAGAGAGGCCTAAGTCCAGTGATCTGGCTCCACCTCACAGAGTGCGGACCAAACGCTGTGCCTGCAACAACCAGCTGGACTCTGAATGCCACTACTTTTGCCATCTTGACATCATCTGGGTCAACACACCAAGTAAGACCACTGTTTACGGCTTGGGCAGCCCTCTGTCACGTCGCCGTAGGTCTGCCGGTCGCTGTGTGTGTGCCGACTCTGACGACCACACCTGCACCAGCTTCTGTCAAGACAGATCTATGGTCAGAGCCTCTGAGAGAGCCAGGGGATGGGCCTTTCCACCCAGGAAGGAAGCAGCCAGGGCCCCTGGGCTTAATGAGCGCTAAACGACATTGTGTGGCAGACAGTAAGGAGTGAAGAGCGAGTACCAGAACAAATGACACTCTAACATGGAGAGGAGCAGAACAAAGGGCTGCTGATAGAGAGATGTGTCACTTGCAGGAAGGCCACAGACCGGTGGGACTGCctgtttgtttgttggtttgCACCTATAAGGAGAGGTTGGAAAACAAAATGGGACAGAGGCCTGAAGACAGAGAATAGACACTAGATCCAAACCTTGAGGGATGGATCAGGCATGATACATACAGGGTATTTGTGCAGCAAAATGTTTGTTAGGGCCAGGAGGGACAAGGATGGTCCATGCTACTGGCAGACTCTGGCCAGGTAGCCGTAGAGGAAAGAACAGTTGATGTGTTTATGCTGGTTGTCTGTGCTCAAAACAGTGGCAGACACATTCTTTCCATCATGACCGCAATGAACAGGGAGAATATGACTGATACGATCATCAAAATTATGTATGAGATAGCCACTATGTTTTTCTCATTATTTTGCCAAACATATTTAATCTCTCCTTTATTTGATTTGTATAATAACAACATATTATGATTGCCATGCAGGTTATTCATCAAGGAAAATGACTGAGGTCATTTAAAGGTGCAATGTTTAggattatacactgagtgtacaaaacattaagaataccttcctaatattgagttgtaaagttgactggatgtcctttgggtggtggaccattcttgatacacacgggaaactgttgagtgtgaaaatcccagcagcgtcacagttcttgacacaaaccggtgagcctggcacctattaccataccctgttcaaaggcacttaaatcttttgtcttgcccatttaccctctgattggcacacatacacaatccatgtctcagatgtctcgaggcttaaaaatccttctttaacctgtctcctccccttcatctacactgattgaagtgaatttaacaagtgacatcaataagggatcatagctttcaccttgattcacctggtcagtttatgcaatggaaagagcaggtgtccttaatgttttgtacactcagtgtatattgagtGGGTATGGTTGGGTGGGAGTAAAAAATACATAACATTGAAACATACGGTATATTGTTGTATTAAATTGATtttgaccacttctgtattgagtgaCTGTGTGAAGCagtgtgtaataata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563612.2 False 1402 mRNA 0.47 4 43776526 43783884
TU168015 True 1700 TUCP 0.45 4 43776063 43783719

Neighbor

gene id symbol gene type direction distance location
LOC110490292 LOC106605010 coding downstream 16176 43698959 ~ 43760350 (-)
LOC110490284 rcc1 coding downstream 91027 43678155 ~ 43685499 (-)
LOC110490218 NA coding downstream 168306 43604209 ~ 43608220 (-)
LOC110490183 LOC106605015 coding downstream 384366 43372725 ~ 43392160 (-)
LOC110490160 LOC106605017 coding downstream 512281 43261166 ~ 43264245 (-)
LOC110490306 LOC106584341 coding upstream 25784 43809668 ~ 43877802 (-)
LOC118940358 LOC106584332 coding upstream 139076 43922960 ~ 43923737 (-)
LOC118940359 NA coding upstream 140306 43924190 ~ 43928281 (-)
LOC110490335 ptpru coding upstream 300676 44084560 ~ 44422885 (-)
LOC110490352 NA coding upstream 652040 44434790 ~ 44464449 (-)
G146409 NA non-coding downstream 1136 43772834 ~ 43775390 (-)
G146407 NA non-coding downstream 4358 43771871 ~ 43772168 (-)
G146405 NA non-coding downstream 7206 43767860 ~ 43769320 (-)
G146404 NA non-coding downstream 8725 43767503 ~ 43767801 (-)
G146402 NA non-coding downstream 11003 43765317 ~ 43765523 (-)
G146412 NA non-coding upstream 3117 43787001 ~ 43787229 (-)
G146414 NA non-coding upstream 9443 43793327 ~ 43793683 (-)
G146416 NA non-coding upstream 10229 43794113 ~ 43794320 (-)
G146420 NA non-coding upstream 16266 43800150 ~ 43800657 (-)
G146462 NA non-coding upstream 112536 43896420 ~ 43952460 (-)
G145767 NA other downstream 504010 43270717 ~ 43272516 (-)
G145010 NA other downstream 1069247 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 2046104 41714269 ~ 41730507 (-)
G142918 NA other downstream 2912805 40863214 ~ 40863721 (-)
LOC110490449 scmh1 other upstream 788064 44571948 ~ 44606865 (-)
G147800 NA other upstream 1079201 44863085 ~ 44863559 (-)
LOC110490531 LOC106560723 other upstream 1350684 45134476 ~ 45168260 (-)
tmem86a tmem86a other upstream 3060296 46844180 ~ 46921608 (-)

Expression


Co-expression Network