G146409


Basic Information

Item Value
gene id G146409
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43772834 ~ 43775390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU168016
AACATTTTGAACTGACACCAAGCCACTGAATCTCACCAGAATGTGAAACGTTGAAAGGATACTATAGAAATGAGCTTATGATGTGACGCGTCTATAGTGAGGAAGAAAATGCTGTAATATTGAATTGTTACGTATATAAGGTACATTTTAGCTCTCCAACAGACCTATACATTATGATTCTCCATTCACTTTTACTAGGAAGCAAACTAATAACAATTTTGAAAAACTACTGTTTTGAAAAATACTCTCACATGCCACATGGAGCAAATAATTGAGAAATATGATTTTTCTGTTTGTGTATAGTATTTAACTTCTCCCAGTCTCTCAAGCCAATGCAAACACTGCTCTTAGTTCAAACGAAGGCCCAAGGAATTCAAAACCTCAAAttaattaaaacaaaaaaaagatttCCCCTTCAAAAGCAGGCCAGAAGAACAGATATCACTTAGGTTCTGTCTAGCAACCGCGatgcattggctgttcagatgtgtaggagactcagcataggagaaagggttaaatatcagtgcttgtgtgaatatgTATTTTGTCTTATGCAGCTGTATCGATTCAATTGGTGAATGAACTTGGTTTGTGCTTTATTAAGCGTCCGTGAGTTTTAATAGGTTAATTAGAACCTAACAATGGTCATATCGGTTCTACACAGAAAAACAGGATGCTTTCTCCCATTCCTTTTCATCCAAAGTTGAGGAGGGAGAAATTACAGGAAGTTGCAGGCTAGTTGTTGGTCAATGAGAGGAAGTGATATGAAGTAGCGGAGGGTTGATAATGAGGTGAGTAATGTTTTCTCCCTGTTTGGCTGTTGCCAAGGTGCACTTTTGTCATTACCCCAGTACGATCTGTAAGCAAAAGTACCCAACAATATTTATATATGAAAACAGCATGCCACTCAATGGGTATAGTTTATGTTAACCCACTTCTACATTCTATTCATTAGTAACAATGAACAGCTATACTGTGACCTTGTGAAGTGATTTCCTATGAGAACCTGCAGCATGGATTTAAAATCAGCTGGCAGCAGAATCTTGCATCTGTCTGTGCCTCTACTGGGCTGGCTAAACTTTATCCATGGTGCTGTAAGTCTCTAAAGGGCCTACTGTATAAGCCAGACTTCAAACTGCAGACGCTAACATCACTTTCATCCTTCCTGTGATCAGTTAGCCTAAAGTGACAAGAGGAGATAATGCATTGATTGAAGACTATTCTAAGATATTGCGTTCTGATAGAAGTAAATTACTAGCTTCCCTCAAAAGTTACTGAGCTGACATTATTTCCAACATTTCGGTTTGAGGAGATATGTTGGTATAGTTGGTTCATGCTCTTTTGTTCACTTGATTTATTATTGCCACTAATattgtggcgaaatctgcacggagccttcaccgtgcactgccactttaagagcgcatgagcagtaaggaaggaggaaataaagagagctcgttcagctctttggggaggggctctttggtggcgcgacagtttgattgtgtgtgctgtgctgcagaagttttgtttgttttcagcgtgtgtagtttatagagtatttgactcaatcatcggtgtaatcgctctaggtcgtggttgttttcgtttgggaccgcacccgttatggatcgcatggattagtagcaacattgttgcgaagctttaacatgcaaaccaacaaaccatcggacagtcagacagtacacctgcacgcctgaagaccacagctaagatctctcttgttctctttctctttttctcttccctctatcgttccagtgctttaccctgcaacagactctctatttttccaatgcacttcccattgaggttcattagagctggactattattgccctgccagaagtatttggacattttagttaaaagggaggttgtttgcaagttgtgtattgttatgtgaactgtattgagatgtactaatgacatgtggccgagaagactgtggacatttttaaggcctttgttgtgtcgatgaacaccccccccacacacattcataccctctgcactcatccactagaaagtaatacagattattgcaaatcctctgactgggttcgttcttgtatgaagttgctgttgaattgctctgccattattagtattattgtatgaggtattcttgttggggttacccctgtgctgtgatgtgggttttatatgatgtgtattctcttttctctccactggctatctggtaaacaggctacactctaggcagtctcttctgctgatgtgtgtgggtctggtagtggttctctctattctactcttttcctttcggcatggttaatacctgcctggcgcccgaacaaaatcttttacccctctctaataaataccgctacaatAATGTGTCACTCTTACATTCTACAACCTAATGTACCATCAAACCTAATGTTCAAGGAATTAATCAAAACATGTATTATAATGTACTTGTTCAAGTATGTGCAAGAAATAAGGGTACATTATCACGTAAGTCATCCACTCTAGTATGTCAGTGCATTAGTAAATTAATGAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168016 True 2557 lncRNA 0.51 1 43772834 43775390

Neighbor

gene id symbol gene type direction distance location
LOC110490292 LOC106605010 coding downstream 12484 43698959 ~ 43760350 (-)
LOC110490284 rcc1 coding downstream 87335 43678155 ~ 43685499 (-)
LOC110490218 NA coding downstream 164614 43604209 ~ 43608220 (-)
LOC110490183 LOC106605015 coding downstream 380674 43372725 ~ 43392160 (-)
LOC110490160 LOC106605017 coding downstream 508589 43261166 ~ 43264245 (-)
LOC110490298 LOC106605170 coding upstream 1136 43776063 ~ 43783884 (-)
LOC110490306 LOC106584341 coding upstream 34278 43809668 ~ 43877802 (-)
LOC118940358 LOC106584332 coding upstream 147570 43922960 ~ 43923737 (-)
LOC118940359 NA coding upstream 148800 43924190 ~ 43928281 (-)
LOC110490335 ptpru coding upstream 309170 44084560 ~ 44422885 (-)
G146407 NA non-coding downstream 666 43771871 ~ 43772168 (-)
G146405 NA non-coding downstream 3514 43767860 ~ 43769320 (-)
G146404 NA non-coding downstream 5033 43767503 ~ 43767801 (-)
G146402 NA non-coding downstream 7311 43765317 ~ 43765523 (-)
G146299 NA non-coding downstream 36910 43735574 ~ 43735924 (-)
G146412 NA non-coding upstream 11611 43787001 ~ 43787229 (-)
G146414 NA non-coding upstream 17937 43793327 ~ 43793683 (-)
G146416 NA non-coding upstream 18723 43794113 ~ 43794320 (-)
G146420 NA non-coding upstream 24760 43800150 ~ 43800657 (-)
G146462 NA non-coding upstream 121030 43896420 ~ 43952460 (-)
G145767 NA other downstream 500318 43270717 ~ 43272516 (-)
G145010 NA other downstream 1065555 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 2042412 41714269 ~ 41730507 (-)
G142918 NA other downstream 2909113 40863214 ~ 40863721 (-)
LOC110490352 NA other upstream 659400 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 796558 44571948 ~ 44606865 (-)
G147800 NA other upstream 1087695 44863085 ~ 44863559 (-)
LOC110490531 LOC106560723 other upstream 1359178 45134476 ~ 45168260 (-)

Expression


Co-expression Network