LOC110490306 (LOC106584341)


Basic Information

Item Value
gene id LOC110490306
gene name LOC106584341
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43809668 ~ 43877802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563622.2
TGAGAGATGACGAAAGGGGGCGGGATCCTCTTGACGTCTGGTGCGCCGGCGCGGATGTTTGTGTAGCGCGAGATGATGTTTTTGTTGTTCTAATCTTCTGAATATGGCTTCGTAGTTCTTTTGACAAAGCGTAGGGAAAGCCCCCCcacaatttatttcagcttgcCTTCAAGCATCGCTGCAAGACCTGCGCTACAGACACCGTGACACAGCCGAGGAAATGCGGACTTCTAGCCCTTTCGCTACGGGTTAAATGGCTGCAGCACCCACACCGTAGCAAGCTGATCCAGTGAGGTGCTTAAATTGACCAGTGAGGAACAAGAGAAGACCCAGAGGTTTCTACTCAGCAGAACCACAGTGTCAGAACGGTCCAGCAGTATGCCAAGCCAAACCCTCATCTAGCTCCCAGTCCACGGTGAAGACCTGTCACAATGGCTCAGGCCGGATGGGAACAGGCTTACTCCGTGATGAGAGAGGATCTATGTTTACCCACATCCTCTATGCTGCTCTGGGGCACATTTTAATTATGTCTTATTTGATCCTCTTGAATGACTTTTGGCCTGCTCATAAAAAAGGTACTCCATTAGATGTTCCCTTGTCCCAGGCATCTCTGCGGCACTGTGGCTAGCCTCATGAGACTGTGTGGCACACTGCTCCCAGAGGCATTCCCTGTGTGTCTGTAAGGCCTCCTCCCCACTCTATGGAGGCGGAGCACAGCCATCCTGCTGATGGTGAGCGATCCGGAAGGAAACAGCAGCCTCTGTCTGCTGAGGCCGCTGAGTCCCCCACAGGGTCCCGTCCACCTCAGCCACAGCAGCCGCCATCCAACCCCTGCCCTGTCCACGTTGGCCAGGGACGCCTCCACCACCGCAAGCCCAAGCGTAGCGACCTGCTCCTCAGGCTTCAGCATCAGCACAAGACCCAAGCAGCAGCATGGCAGCTCTCAACAGATACCCCAGGTCCTTCAGGAGGCAgcatctcctccccctccacctcatCCCTACAATCCTCCTCTACCCAAGGCCACAATACTCAGGGGGTCCAGTCCCAGCCCAGTCAGGAAGCCCCAGAGGGCAGCCCGTCTAAAAGAGGTGAGAGGAAGCCCCAGAAACTGGGGAAGTATGTGTGCACTTACTGCGGCCGTCCATGTGCCAAACCCAGCGTTCTCCAGAAACACATCCGCTCTCACACAGGGGAGAGGCCTTACCCCTGCGTCCCCTGTGGCTTCTCCTTCAAGACCAAGAGTAACCTGTACAAGCACCGCAAGTCCCACGCCCACCGAATCAAGGCAGGCCTGGTGTCCAGCCGGGATGAGCTGAGCCTGAGTGGACCTGCGATGAGCGCCCCGGGAGAGGATCCCGAGGAGCCTACAGAGGGGGAGAGCACAGACTCTGAGGAGGAGTCGGGTCAGTACAGGAAGGAGAGGTTGAGCAAGCAgaagagtagcagcagtttggCACTGTTAGAGCAAGAAGAGGGCCAGAGGTCTGACAACTCCCAGGCCGTGAAGCAGAGACTGGCCATGAGGCTGAGTGAGAGGAAGCGTGGCCCCATGGCCTCCCCAGAagaccctccctcctcctccacctcctcctcactgGGCCCCAGCAGTAAAGGCAGCCAAGAGTCAGGCTACTTCTCCCTTTCGAGGAGCACTGAGATGAGCCGAGCTGACTCCCAGGTGAGCCCTCCCACCGCCAAAACGTATGCCGAGATCATCTTGGGCAAGTATGGACGGCTTGGAGGGCAGCGCGGTCCCCATCAGCAACACGCCCACTCTTCTTCAccagggatggaggagaagagcAGCATGCCCTTTAGCATGCCCAAGACGCAGGTCATCGAGCACATCACCAAACTCATCACCATTAACGAGGCGGTAGTGGACACCAGCGAGATCGACAGCGTCAAGCCCAGGCGCTCCTCACTCTCCAGGAAGAGTAGTCTGGAGTTACCCAAGTTCTCCTGCCCCAAAGACCCCTATATGTTTGAGCCTAAGGGAGAAAGCCCAAGCCCCAGTATGGCAGGCCAATCATTCTTTCCCCATGTCCAAGACGTAGACCCATCTGGGGTCCAGAAGTCTTCCTCCTCAGTGCCTCTGCTGAGAAGCCACTCAATGCCCACCTCAGAAGGCCAGGGAAACCACTCCACCACCTCTCCCTGGGGCTTCTGTCGTCTGAGCCACTCCGTTGATGAGCAGCAGGCCGTGGTGGCTGAGATGAGGGTGGGCGGGCAGCACCGTTTGCTGAGGCGCCAGCCCGCCATCGAGATGCCCCTCGGGGCTGAACTCAGCCTGGAGGAGGCTGGCCCCTCCTACACAGTAACAGAAAGTGGCCTAACCAggaagcagcaacagcagcaacgCAAATGTCCAAGGCTCTATGAGTGCAAGGCCTGCGGAGTCCGCTGTAAACAAAGGGAGAGTTACGAGGCCCACAGGGGTCTTTGCACAGGCCAGCCAATAaaggagctggagagaggagaggtggatggggCGTGCCGGGATGACCGTCCCCAGATGATGCACTATAAATTCCGGGCACTGGCCATggcagtgaggaagaggaggaaagaggagagtcTGGAGGAGGATCCTCCTAGCCCTGGGCCTACAGCTGTTGTGACCTGCAGCCATGCAATCACCACTGCAGTGCCAAGCCTGGTGGAGCAGAGTGAGGCCTTTTCAGGTGCTCTCTCACAGGCTGAGCAGCAGCAGCAAGACAGGAAGGGCATCTCTGTCATCCAGCACACCAGCTCCTTCGAGAAGCAGGAAAGTATGTCCATGGAGAGCCAGGAGTCTATGGGGCTCAGAGAGAGCCAGTCAACACTGCAAAAACAGCCGCAGCCAAAATCATCACCCTCCATGTCCCGCCTGGTCCGCCAGCACAACATCCAAGTGCCAGAGATCCTAGTGACGGTGGAGCCTGACGCTGATATGGTGTCAGTGTCGCCCACGGTGACGGCATCCTCGTCCAAGGAGccagagagagtggtggaggagTTCCAGTGGCCTCAGCGTAGCCAGAGTATGGCTCAGCTCCCCTCCGAGAAGCTGCCACCAAAGAAGAAGCGTCTCCGTCTAGCCGAGGCTGCTGCCCAGTCTTCCGGGGAGTCCAGCTTTGAGTCGGTATCGCTGGGGCCCCGGAGCCCCAGCCAGGAGAGCAACATTTCCCACTCACCCAGCCGATCTGCCTCTTTTGAAGACATGGGGGAAAAACCTGCTGAGCCTTCCCCCTGGGGCTCCAGCTGCACCCAGGGCTCCCACATGCTAGCCGTGCCCTCGGGCCCCCACCAACAATATCAACCCCAAAGAGAGATGCGGCGCTCAGCCTCGGAGCAGGCCCCTGCCAGCCCACAGCATACGGACGAGGTTGTGGAGACGAGGAGCAAATCCTTTGACTATGGGTCCCTATCGCCGCAACAGTCTGCATCAgcctggagggagaggaggaagtgcCTACTGGTGAAGCATGCCACCCTGGGCGAGCCAGACCACGAGGAAGGGGCCGTGGCCAGCCACTCGGGCAGACCAGGGAGCCCCAAGCCGAGCCCGTCCTACACCAGCCACCTTGCCCTCCACCCAGCTGAAGCCAGCACCTCGAGGCTCAGCCTAGAGGCCATAGGGAAGACTGTGCAGCTGTTCCACCAGCCCCGGATACCCCCATTCCCCATGCAACCAACTGGGCATGATCGGTTCCCTCTTGGCCAGGTAGCCCAACTCCACCCTGTCACTACTGCCATCTCAGATGTCCTCTCCACCCACATCATTCACAGAACCTTCTTACACAAACACCCTTCTCCTCCAACCATACAAGTCCACCCAGGGCAGCTTCACGTTGCAGAATGCTTAGGCCTGCCTCTCCATCCTTTCTCAGCTCTGCTCTCCCTGCAGAACCCCACCGGGGCTGGCGAGACTGTGTACCTCCCTGTTTCCCCTGGGCTCACCATCCAAGTCCCCACACAGCCCCCCATACCCTCCACTGTGGTTCTCCCTTCCCCATCTCCTCAGTCCTTAGTCCCCCTACCCTGCCTCTATCCCCCGCCTGTCATCGCAACGTGCCTGGCGCAGCTGACGCCAGTCGTGTCACTGGTGGTTCCAGTGCGCCTCCAGACCCACATGACCACCTATGCCAGTGCCCTGTACACCACCCTATCCCAGATCTTGGCATCAGCCCGCTCCCAGGAGCCCATCTGCTGCATGGCCATGGTTATCATGGGCCAGCTGGAGCAGGACAAGCTACAGAGGTCCTATCTGAAGATCCCCACCCCGGACTTCAAGAGCTACCTGCCCCTGTCTCTGCCCCTGGAGCTGGGCTCTGTGTCCAGGGAGGGCTACGGGCCACTGGGGGCTGGAGGGAGCAAACGCATGCTCTCCCCTGCAGCCAGTCTGGAGCTTAGCACAGAGGCCCAGCGCCAGCAGAAACgagtgaaggaggaagaggaggaggaagagaaggtgggagaggaagaggaaaataGGGGTACTGGGGGAGAACCTGAAGCAGGGGAGGATGAAGAGAAAGAGCCGGAGAAGGCACAGATAGGAGTTACTGTGAAagtcgaggaggaagagaaggtacGGGACCCAGAGGGGcacagggaagagagggagatacaaGGGAAGGCTGAACCTAAgaaagaaaaggggagggaggagaatgcGAGCCAGGGAGTGAGTGCTTCCTTTGTACCCCAGAGTCCAGAGCGAGCCAAAGCCCCCTCGTATACCAGCCTTCACACAACCACCTCAGTCAGCTGGTGCTACTTGAACTACGTGAAGCCCAACCCGTCTGCTCAGAGGGAGTCACAAACCTCCGTTTACACCTCCTGGAGCGTCAGCATGTACAACCCCAACCTGCCAGGCCTGTCCACCAAGCTGGCCCTGTCCCTGCTGAGCTCCAAGCAGAAGCACAGCTCGGAGACATACACCATGGCCACAGCTCTAACCCCTGCAACAGGCAAGGTGGTCTCTGCCAGCAGCAGAAAGACCTACATTTCAGAGGTACATGCTATCCCACCCAGCACCCCCGTCGAAGTGAAGGAGCCACCACAGCAGCCTGAGacgaaggggaagagagaagagcaagggccctccacctccaaacaGAGCGAACCTCTCCGCGTCCAAATCTTCGAGGGCGGGTACAAGTCTAATGAGGAGTATGTGTATGTGCGGGGTCGCGGAAGAGGAAAGTACGTGTGCGGAGAGTGCGGGATCCGCTGTAAGAAGCCCAGCATGCTAAGGAAGCACATTCGGACACACACGGATCTCCGGCCCTACATCTGCAAACACTGCAACTTCGCCTTCAAAACCAAAGGGAACCTTACCAAGCACATGAAGTCCAAGGCTCATGGGAAGAAGTGCCAGTCAATGGGAACGTCTGGGTCTTCACTGGACGAGCCAGAGACCGAGGAAGCAGGAGGTATTGAAGAGCATTTGTCTGGCTCCGAGGACCAGGATGAGCACCAGTTCTCTGACGTGGATGATTCAGAGGAGGACGATGATGAGGAAGAAGAAGAGTCCTCATCTTGCTCCTCCAACTGCAGTCTGTCTGCAAGGGGGCACTCCAGCAGCAAAAGACAGTCCCAGCAGGGCACGCCTGACCCCTCAGCCCCAGAACCCCAGCCAGctcccagcccctgtcccagcCAGGATCTCTCTCCCACCCGCAGACTGTGGCCCAGCGGGCATGCTTCCTCTCCAAAAAGCCGGAGGGCACAGTTCTCCCGCCTTGGCTTGGACGCCTCCCCCAGGGCTTTCTCCCCTAGCAGTGAAAGCTGCTCTCCCATCCGAAGCCTTTCCCTCAGACGGAAGCTGGCCTCCCACAACCGACACCTCTCGCCTTCCCCCAAGAGAGGACCATCCCCCATCAGAGCTCTATCCCCCCTGAACCCTATGcggcctctctcccctctccggcCAATGTCCCCTACCCAGTATCGGGTGTTGTGGGCCCAGGCCTCTCCCTCGCCCCTGGGGGTTCAGCATAGACCTCGGAGCTCACCCAGTCGTTTGCCATGGGACATCCCCAGTACGATGGCCAGCGATCGCAGACAGGTGGGCTCAATGGAGAGGATAGGAACACCAAGTGAAGGGCAGATTGGTCCAGAGCCCTGCCTGTCATTCCCCCCAGCTTTCCGTCTGTCCCCCAGGGACAGCACTAAAGCCCAGTCCATGGACCGCATCTTCAGCCACCTGCCACTGCACTCACAGCAGGCCAGGGTGCCCTACCTGATGATCCCCATTGGGGGCATTCAGATGGTGCAGGCTCGTCCCCGCTCCCACCCCACTACCCCCACCTCGGCCTCCTCTCCCCCGATGGAGGGGCTTCTACTGGGCCAGACCAGGAGGGAAGCCCCCTGGTGCAGGACCCCCAGAACTCAAGGGCTCAGAACTCCCGAGGACCACTGGTCAGACAGCCAGGAAGTAGTAGGAGCCAGCCAATCAGGGCTGTGCATTCCCAGTTTAACCCCACCCATACGTTCCAAACCCTCCACCTCGCAGCAAGGTAGGATGGACCCAGGGATGATAAACACAAAGCAATACGACAGCTCACACAGCTCCTCCCACTGACACAGGTCTGAGGCAGAGACCAGAGAACGATGGCCCTCACATGGCCAGGCAGGACCATCCCCCTAGTCAGCCAgtccccccctcccacacacaggATTGGACAGCTGTTTGAGAGGCAGGAGCCACCAGGGTTGGGGTCCAGAGCGACTGGTTCAGAATTGGTAGAGGGAGGAGCTAAAGGTGGAGACTCAACCAATCAAGGCCAGAGCACTCCACCCTTTGATACGTCATGCGTCCTTTACGCTTTTTGTTGCTACTCTTGTTTTTGGGTTTTGTATTGCTTTGTTTTTATACAGTTTTCAATACAATTGTTAACTTAAATGTTAGTTCTGCAATATTCAGGTTTGTTATAAAATGCACTTTTTTCTTTTTGACGATTTCTTTAAATCTCTCGATCTTACCTTCTGTATCTCTATTGATACTGCTATCTTAATATATATTTGAATATAtgtaaaataaatatgaataCATTTGTAAATGACCAAAATCTTTAATCAACAATAAATGCACATGTTGTTTTGTCTCTTTGTCCAGTATTACTCAAACTGTAGTTACTTGTGCCTTTTCTGTCTGGGTTTGTGTCTTGAGATGACGACAAAGATAAAAGGCTGTGATATGCACTCTGTGTTTCTAGGAAGGGGGTTCCTGTGTGGCGTGATGACTGTTTGTATCCTTATTAGAGGGATAGTTAAgggttagaggtagtttcgcgagccaatgctaactagctgtACCCGAAGACTTCCAGTCTTTGCACtaagctagttagcattggcttgcgaaACTACAGCACCTCTACCTTcattcatactggatgcagagacatgaAAATGAATTGCCAAAAccccaaactatccctttaaggccATTGCATTGATGTCAGGGTATTTTAAAATATGGGATATGAGGTGGTATATTGAAGGAGCAGTGAGCGCTTTGCAAAGAAAATGCACTGAAgtcatatttttttataaaaaaagatTTGTCAATGTAATGCCTATGTACAGAGAAGTGCTCcatatttattattttgtttaactATGAAAGTGATTCTTGTTTAAGTTCTTTTACTTtgtatttttggaggaaaaaaaaCATGTCTGTCTTTTTCATAATGTTCTCACAACTTGAAATGGAGATGGACAGGAAGGTCTCTTTAAGATTGGATATGGTACAAGGAGGAACAAGTGCCCTAAAGATTTTCACACACAGCAAATGTTTTGTCTCTGAACCAATAAAAATTGCACCATA

Function

NR:

description
transcription factor HIVEP3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563622.2 True 7825 mRNA 0.56 7 43809668 43877802

Neighbor

gene id symbol gene type direction distance location
LOC110490298 LOC106605170 coding downstream 25784 43776063 ~ 43783884 (-)
LOC110490292 LOC106605010 coding downstream 49318 43698959 ~ 43760350 (-)
LOC110490284 rcc1 coding downstream 124169 43678155 ~ 43685499 (-)
LOC110490218 NA coding downstream 201448 43604209 ~ 43608220 (-)
LOC110490183 LOC106605015 coding downstream 417508 43372725 ~ 43392160 (-)
LOC118940358 LOC106584332 coding upstream 45158 43922960 ~ 43923737 (-)
LOC118940359 NA coding upstream 46388 43924190 ~ 43928281 (-)
LOC110490335 ptpru coding upstream 206758 44084560 ~ 44422885 (-)
LOC110490352 NA coding upstream 558122 44434790 ~ 44464449 (-)
LOC110490449 scmh1 coding upstream 695640 44571948 ~ 44606865 (-)
G146420 NA non-coding downstream 9011 43800150 ~ 43800657 (-)
G146416 NA non-coding downstream 15348 43794113 ~ 43794320 (-)
G146414 NA non-coding downstream 15985 43793327 ~ 43793683 (-)
G146412 NA non-coding downstream 22439 43787001 ~ 43787229 (-)
G146409 NA non-coding downstream 34278 43772834 ~ 43775390 (-)
G146462 NA non-coding upstream 18618 43896420 ~ 43952460 (-)
G146467 NA non-coding upstream 68885 43946687 ~ 43950351 (-)
G146504 NA non-coding upstream 95739 43973541 ~ 43974042 (-)
G146515 NA non-coding upstream 111241 43989043 ~ 43989336 (-)
G146524 NA non-coding upstream 121465 43999267 ~ 43999567 (-)
G145767 NA other downstream 537152 43270717 ~ 43272516 (-)
G145010 NA other downstream 1102389 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 2079246 41714269 ~ 41730507 (-)
G147800 NA other upstream 985283 44863085 ~ 44863559 (-)
LOC110490531 LOC106560723 other upstream 1256766 45134476 ~ 45168260 (-)
tmem86a tmem86a other upstream 2966378 46844180 ~ 46921608 (-)

Expression


Co-expression Network