RNA id: XM_021563622.2


Basic Information

Item Value
RNA id XM_021563622.2
length 7825
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC110490306
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43809668 ~ 43877802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAGATGACGAAAGGGGGCGGGATCCTCTTGACGTCTGGTGCGCCGGCGCGGATGTTTGTGTAGCGCGAGATGATGTTTTTGTTGTTCTAATCTTCTGAATATGGCTTCGTAGTTCTTTTGACAAAGCGTAGGGAAAGCCCCCCcacaatttatttcagcttgcCTTCAAGCATCGCTGCAAGACCTGCGCTACAGACACCGTGACACAGCCGAGGAAATGCGGACTTCTAGCCCTTTCGCTACGGGTTAAATGGCTGCAGCACCCACACCGTAGCAAGCTGATCCAGTGAGGTGCTTAAATTGACCAGTGAGGAACAAGAGAAGACCCAGAGGTTTCTACTCAGCAGAACCACAGTGTCAGAACGGTCCAGCAGTATGCCAAGCCAAACCCTCATCTAGCTCCCAGTCCACGGTGAAGACCTGTCACAATGGCTCAGGCCGGATGGGAACAGGCTTACTCCGTGATGAGAGAGGATCTATGTTTACCCACATCCTCTATGCTGCTCTGGGGCACATTTTAATTATGTCTTATTTGATCCTCTTGAATGACTTTTGGCCTGCTCATAAAAAAGGTACTCCATTAGATGTTCCCTTGTCCCAGGCATCTCTGCGGCACTGTGGCTAGCCTCATGAGACTGTGTGGCACACTGCTCCCAGAGGCATTCCCTGTGTGTCTGTAAGGCCTCCTCCCCACTCTATGGAGGCGGAGCACAGCCATCCTGCTGATGGTGAGCGATCCGGAAGGAAACAGCAGCCTCTGTCTGCTGAGGCCGCTGAGTCCCCCACAGGGTCCCGTCCACCTCAGCCACAGCAGCCGCCATCCAACCCCTGCCCTGTCCACGTTGGCCAGGGACGCCTCCACCACCGCAAGCCCAAGCGTAGCGACCTGCTCCTCAGGCTTCAGCATCAGCACAAGACCCAAGCAGCAGCATGGCAGCTCTCAACAGATACCCCAGGTCCTTCAGGAGGCAgcatctcctccccctccacctcatCCCTACAATCCTCCTCTACCCAAGGCCACAATACTCAGGGGGTCCAGTCCCAGCCCAGTCAGGAAGCCCCAGAGGGCAGCCCGTCTAAAAGAGGTGAGAGGAAGCCCCAGAAACTGGGGAAGTATGTGTGCACTTACTGCGGCCGTCCATGTGCCAAACCCAGCGTTCTCCAGAAACACATCCGCTCTCACACAGGGGAGAGGCCTTACCCCTGCGTCCCCTGTGGCTTCTCCTTCAAGACCAAGAGTAACCTGTACAAGCACCGCAAGTCCCACGCCCACCGAATCAAGGCAGGCCTGGTGTCCAGCCGGGATGAGCTGAGCCTGAGTGGACCTGCGATGAGCGCCCCGGGAGAGGATCCCGAGGAGCCTACAGAGGGGGAGAGCACAGACTCTGAGGAGGAGTCGGGTCAGTACAGGAAGGAGAGGTTGAGCAAGCAgaagagtagcagcagtttggCACTGTTAGAGCAAGAAGAGGGCCAGAGGTCTGACAACTCCCAGGCCGTGAAGCAGAGACTGGCCATGAGGCTGAGTGAGAGGAAGCGTGGCCCCATGGCCTCCCCAGAagaccctccctcctcctccacctcctcctcactgGGCCCCAGCAGTAAAGGCAGCCAAGAGTCAGGCTACTTCTCCCTTTCGAGGAGCACTGAGATGAGCCGAGCTGACTCCCAGGTGAGCCCTCCCACCGCCAAAACGTATGCCGAGATCATCTTGGGCAAGTATGGACGGCTTGGAGGGCAGCGCGGTCCCCATCAGCAACACGCCCACTCTTCTTCAccagggatggaggagaagagcAGCATGCCCTTTAGCATGCCCAAGACGCAGGTCATCGAGCACATCACCAAACTCATCACCATTAACGAGGCGGTAGTGGACACCAGCGAGATCGACAGCGTCAAGCCCAGGCGCTCCTCACTCTCCAGGAAGAGTAGTCTGGAGTTACCCAAGTTCTCCTGCCCCAAAGACCCCTATATGTTTGAGCCTAAGGGAGAAAGCCCAAGCCCCAGTATGGCAGGCCAATCATTCTTTCCCCATGTCCAAGACGTAGACCCATCTGGGGTCCAGAAGTCTTCCTCCTCAGTGCCTCTGCTGAGAAGCCACTCAATGCCCACCTCAGAAGGCCAGGGAAACCACTCCACCACCTCTCCCTGGGGCTTCTGTCGTCTGAGCCACTCCGTTGATGAGCAGCAGGCCGTGGTGGCTGAGATGAGGGTGGGCGGGCAGCACCGTTTGCTGAGGCGCCAGCCCGCCATCGAGATGCCCCTCGGGGCTGAACTCAGCCTGGAGGAGGCTGGCCCCTCCTACACAGTAACAGAAAGTGGCCTAACCAggaagcagcaacagcagcaacgCAAATGTCCAAGGCTCTATGAGTGCAAGGCCTGCGGAGTCCGCTGTAAACAAAGGGAGAGTTACGAGGCCCACAGGGGTCTTTGCACAGGCCAGCCAATAaaggagctggagagaggagaggtggatggggCGTGCCGGGATGACCGTCCCCAGATGATGCACTATAAATTCCGGGCACTGGCCATggcagtgaggaagaggaggaaagaggagagtcTGGAGGAGGATCCTCCTAGCCCTGGGCCTACAGCTGTTGTGACCTGCAGCCATGCAATCACCACTGCAGTGCCAAGCCTGGTGGAGCAGAGTGAGGCCTTTTCAGGTGCTCTCTCACAGGCTGAGCAGCAGCAGCAAGACAGGAAGGGCATCTCTGTCATCCAGCACACCAGCTCCTTCGAGAAGCAGGAAAGTATGTCCATGGAGAGCCAGGAGTCTATGGGGCTCAGAGAGAGCCAGTCAACACTGCAAAAACAGCCGCAGCCAAAATCATCACCCTCCATGTCCCGCCTGGTCCGCCAGCACAACATCCAAGTGCCAGAGATCCTAGTGACGGTGGAGCCTGACGCTGATATGGTGTCAGTGTCGCCCACGGTGACGGCATCCTCGTCCAAGGAGccagagagagtggtggaggagTTCCAGTGGCCTCAGCGTAGCCAGAGTATGGCTCAGCTCCCCTCCGAGAAGCTGCCACCAAAGAAGAAGCGTCTCCGTCTAGCCGAGGCTGCTGCCCAGTCTTCCGGGGAGTCCAGCTTTGAGTCGGTATCGCTGGGGCCCCGGAGCCCCAGCCAGGAGAGCAACATTTCCCACTCACCCAGCCGATCTGCCTCTTTTGAAGACATGGGGGAAAAACCTGCTGAGCCTTCCCCCTGGGGCTCCAGCTGCACCCAGGGCTCCCACATGCTAGCCGTGCCCTCGGGCCCCCACCAACAATATCAACCCCAAAGAGAGATGCGGCGCTCAGCCTCGGAGCAGGCCCCTGCCAGCCCACAGCATACGGACGAGGTTGTGGAGACGAGGAGCAAATCCTTTGACTATGGGTCCCTATCGCCGCAACAGTCTGCATCAgcctggagggagaggaggaagtgcCTACTGGTGAAGCATGCCACCCTGGGCGAGCCAGACCACGAGGAAGGGGCCGTGGCCAGCCACTCGGGCAGACCAGGGAGCCCCAAGCCGAGCCCGTCCTACACCAGCCACCTTGCCCTCCACCCAGCTGAAGCCAGCACCTCGAGGCTCAGCCTAGAGGCCATAGGGAAGACTGTGCAGCTGTTCCACCAGCCCCGGATACCCCCATTCCCCATGCAACCAACTGGGCATGATCGGTTCCCTCTTGGCCAGGTAGCCCAACTCCACCCTGTCACTACTGCCATCTCAGATGTCCTCTCCACCCACATCATTCACAGAACCTTCTTACACAAACACCCTTCTCCTCCAACCATACAAGTCCACCCAGGGCAGCTTCACGTTGCAGAATGCTTAGGCCTGCCTCTCCATCCTTTCTCAGCTCTGCTCTCCCTGCAGAACCCCACCGGGGCTGGCGAGACTGTGTACCTCCCTGTTTCCCCTGGGCTCACCATCCAAGTCCCCACACAGCCCCCCATACCCTCCACTGTGGTTCTCCCTTCCCCATCTCCTCAGTCCTTAGTCCCCCTACCCTGCCTCTATCCCCCGCCTGTCATCGCAACGTGCCTGGCGCAGCTGACGCCAGTCGTGTCACTGGTGGTTCCAGTGCGCCTCCAGACCCACATGACCACCTATGCCAGTGCCCTGTACACCACCCTATCCCAGATCTTGGCATCAGCCCGCTCCCAGGAGCCCATCTGCTGCATGGCCATGGTTATCATGGGCCAGCTGGAGCAGGACAAGCTACAGAGGTCCTATCTGAAGATCCCCACCCCGGACTTCAAGAGCTACCTGCCCCTGTCTCTGCCCCTGGAGCTGGGCTCTGTGTCCAGGGAGGGCTACGGGCCACTGGGGGCTGGAGGGAGCAAACGCATGCTCTCCCCTGCAGCCAGTCTGGAGCTTAGCACAGAGGCCCAGCGCCAGCAGAAACgagtgaaggaggaagaggaggaggaagagaaggtgggagaggaagaggaaaataGGGGTACTGGGGGAGAACCTGAAGCAGGGGAGGATGAAGAGAAAGAGCCGGAGAAGGCACAGATAGGAGTTACTGTGAAagtcgaggaggaagagaaggtacGGGACCCAGAGGGGcacagggaagagagggagatacaaGGGAAGGCTGAACCTAAgaaagaaaaggggagggaggagaatgcGAGCCAGGGAGTGAGTGCTTCCTTTGTACCCCAGAGTCCAGAGCGAGCCAAAGCCCCCTCGTATACCAGCCTTCACACAACCACCTCAGTCAGCTGGTGCTACTTGAACTACGTGAAGCCCAACCCGTCTGCTCAGAGGGAGTCACAAACCTCCGTTTACACCTCCTGGAGCGTCAGCATGTACAACCCCAACCTGCCAGGCCTGTCCACCAAGCTGGCCCTGTCCCTGCTGAGCTCCAAGCAGAAGCACAGCTCGGAGACATACACCATGGCCACAGCTCTAACCCCTGCAACAGGCAAGGTGGTCTCTGCCAGCAGCAGAAAGACCTACATTTCAGAGGTACATGCTATCCCACCCAGCACCCCCGTCGAAGTGAAGGAGCCACCACAGCAGCCTGAGacgaaggggaagagagaagagcaagggccctccacctccaaacaGAGCGAACCTCTCCGCGTCCAAATCTTCGAGGGCGGGTACAAGTCTAATGAGGAGTATGTGTATGTGCGGGGTCGCGGAAGAGGAAAGTACGTGTGCGGAGAGTGCGGGATCCGCTGTAAGAAGCCCAGCATGCTAAGGAAGCACATTCGGACACACACGGATCTCCGGCCCTACATCTGCAAACACTGCAACTTCGCCTTCAAAACCAAAGGGAACCTTACCAAGCACATGAAGTCCAAGGCTCATGGGAAGAAGTGCCAGTCAATGGGAACGTCTGGGTCTTCACTGGACGAGCCAGAGACCGAGGAAGCAGGAGGTATTGAAGAGCATTTGTCTGGCTCCGAGGACCAGGATGAGCACCAGTTCTCTGACGTGGATGATTCAGAGGAGGACGATGATGAGGAAGAAGAAGAGTCCTCATCTTGCTCCTCCAACTGCAGTCTGTCTGCAAGGGGGCACTCCAGCAGCAAAAGACAGTCCCAGCAGGGCACGCCTGACCCCTCAGCCCCAGAACCCCAGCCAGctcccagcccctgtcccagcCAGGATCTCTCTCCCACCCGCAGACTGTGGCCCAGCGGGCATGCTTCCTCTCCAAAAAGCCGGAGGGCACAGTTCTCCCGCCTTGGCTTGGACGCCTCCCCCAGGGCTTTCTCCCCTAGCAGTGAAAGCTGCTCTCCCATCCGAAGCCTTTCCCTCAGACGGAAGCTGGCCTCCCACAACCGACACCTCTCGCCTTCCCCCAAGAGAGGACCATCCCCCATCAGAGCTCTATCCCCCCTGAACCCTATGcggcctctctcccctctccggcCAATGTCCCCTACCCAGTATCGGGTGTTGTGGGCCCAGGCCTCTCCCTCGCCCCTGGGGGTTCAGCATAGACCTCGGAGCTCACCCAGTCGTTTGCCATGGGACATCCCCAGTACGATGGCCAGCGATCGCAGACAGGTGGGCTCAATGGAGAGGATAGGAACACCAAGTGAAGGGCAGATTGGTCCAGAGCCCTGCCTGTCATTCCCCCCAGCTTTCCGTCTGTCCCCCAGGGACAGCACTAAAGCCCAGTCCATGGACCGCATCTTCAGCCACCTGCCACTGCACTCACAGCAGGCCAGGGTGCCCTACCTGATGATCCCCATTGGGGGCATTCAGATGGTGCAGGCTCGTCCCCGCTCCCACCCCACTACCCCCACCTCGGCCTCCTCTCCCCCGATGGAGGGGCTTCTACTGGGCCAGACCAGGAGGGAAGCCCCCTGGTGCAGGACCCCCAGAACTCAAGGGCTCAGAACTCCCGAGGACCACTGGTCAGACAGCCAGGAAGTAGTAGGAGCCAGCCAATCAGGGCTGTGCATTCCCAGTTTAACCCCACCCATACGTTCCAAACCCTCCACCTCGCAGCAAGGTAGGATGGACCCAGGGATGATAAACACAAAGCAATACGACAGCTCACACAGCTCCTCCCACTGACACAGGTCTGAGGCAGAGACCAGAGAACGATGGCCCTCACATGGCCAGGCAGGACCATCCCCCTAGTCAGCCAgtccccccctcccacacacaggATTGGACAGCTGTTTGAGAGGCAGGAGCCACCAGGGTTGGGGTCCAGAGCGACTGGTTCAGAATTGGTAGAGGGAGGAGCTAAAGGTGGAGACTCAACCAATCAAGGCCAGAGCACTCCACCCTTTGATACGTCATGCGTCCTTTACGCTTTTTGTTGCTACTCTTGTTTTTGGGTTTTGTATTGCTTTGTTTTTATACAGTTTTCAATACAATTGTTAACTTAAATGTTAGTTCTGCAATATTCAGGTTTGTTATAAAATGCACTTTTTTCTTTTTGACGATTTCTTTAAATCTCTCGATCTTACCTTCTGTATCTCTATTGATACTGCTATCTTAATATATATTTGAATATAtgtaaaataaatatgaataCATTTGTAAATGACCAAAATCTTTAATCAACAATAAATGCACATGTTGTTTTGTCTCTTTGTCCAGTATTACTCAAACTGTAGTTACTTGTGCCTTTTCTGTCTGGGTTTGTGTCTTGAGATGACGACAAAGATAAAAGGCTGTGATATGCACTCTGTGTTTCTAGGAAGGGGGTTCCTGTGTGGCGTGATGACTGTTTGTATCCTTATTAGAGGGATAGTTAAgggttagaggtagtttcgcgagccaatgctaactagctgtACCCGAAGACTTCCAGTCTTTGCACtaagctagttagcattggcttgcgaaACTACAGCACCTCTACCTTcattcatactggatgcagagacatgaAAATGAATTGCCAAAAccccaaactatccctttaaggccATTGCATTGATGTCAGGGTATTTTAAAATATGGGATATGAGGTGGTATATTGAAGGAGCAGTGAGCGCTTTGCAAAGAAAATGCACTGAAgtcatatttttttataaaaaaagatTTGTCAATGTAATGCCTATGTACAGAGAAGTGCTCcatatttattattttgtttaactATGAAAGTGATTCTTGTTTAAGTTCTTTTACTTtgtatttttggaggaaaaaaaaCATGTCTGTCTTTTTCATAATGTTCTCACAACTTGAAATGGAGATGGACAGGAAGGTCTCTTTAAGATTGGATATGGTACAAGGAGGAACAAGTGCCCTAAAGATTTTCACACACAGCAAATGTTTTGTCTCTGAACCAATAAAAATTGCACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168027 lncRNA downstream 9011 43800150 ~ 43800657 (-) True G146420
TU168023 lncRNA downstream 15348 43794113 ~ 43794320 (-) True G146416
TU168021 lncRNA downstream 15985 43793327 ~ 43793683 (-) True G146414
TU168019 lncRNA downstream 22439 43787001 ~ 43787229 (-) True G146412
TU168016 lncRNA downstream 34278 43772834 ~ 43775390 (-) True G146409
TU168073 lncRNA upstream 18618 43896420 ~ 43952460 (-) False G146462
TU168072 lncRNA upstream 60507 43938309 ~ 43952460 (-) True G146462
TU168079 lncRNA upstream 68885 43946687 ~ 43950351 (-) False G146467
TU168080 lncRNA upstream 68885 43946687 ~ 43950351 (-) True G146467
TU168124 lncRNA upstream 95739 43973541 ~ 43974042 (-) True G146504
XM_021563612.2 mRNA downstream 25784 43776526 ~ 43783884 (-) False LOC110490298
XM_036949306.1 mRNA downstream 49318 43698959 ~ 43760350 (-) False LOC110490292
XM_036949331.1 mRNA downstream 49318 43698959 ~ 43760350 (-) False LOC110490292
XM_036949341.1 mRNA downstream 49318 43698959 ~ 43760350 (-) False LOC110490292
XM_036949350.1 mRNA downstream 49318 43698959 ~ 43760350 (-) True LOC110490292
XM_036949367.1 mRNA upstream 45158 43922960 ~ 43923737 (-) True LOC118940358
XM_036949374.1 mRNA upstream 46388 43924190 ~ 43928281 (-) True LOC118940359
XM_021563669.2 mRNA upstream 206758 44084560 ~ 44422885 (-) False LOC110490335
XM_021563676.2 mRNA upstream 206758 44084560 ~ 44422885 (-) False LOC110490335
XM_021563683.2 mRNA upstream 206758 44084560 ~ 44422885 (-) True LOC110490335
TU168015 other downstream 25949 43776063 ~ 43783719 (-) True LOC110490298
TU167341 other downstream 417539 43372840 ~ 43392129 (-) True LOC110490183
TU167289 other downstream 537152 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 1102389 42706818 ~ 42707279 (-) True G145010
TU165059 other downstream 2079246 41714546 ~ 41730422 (-) True LOC110489860
TU168885 other upstream 556988 44434790 ~ 44436117 (-) True LOC110490352
TU168978 other upstream 694146 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other upstream 694146 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other upstream 694146 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other upstream 694263 44572065 ~ 44578755 (-) False LOC110490449

Expression Profile