XLOC_020641


Basic Information

Item Value
gene id XLOC_020641
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 27146 ~ 36116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041933
CTCAGACTGAAGATTAACCTAACACATGTTGTATTTTAGGATCACACGTAATTTCAAAACTGGATAGAAACTTTGCTATTGTTGCAGGTTCATAAGTGCTGTATTTACTCtgtaatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtaggcTGTGGTTGCGTCTCTGAAGGCTGAAGTGCAGGATTTGCGCAGTCAGCTGCAGGACGCCGCGGCTGCACACGGCCGAGAGCTGCGCAGACTGCAGGAGAACTGCGGAGACCAGCAGACGCGAGCCGACGCCGCACTCACAGAGTTGGAGGAGTGTCGCGCGCTCCTGTCATCCGTGGAGGAGAGCCGAGACGCCGCCAGACGAGAGCTGCTGGAGGCGGAGACACGTTTCTGCCAGATACGAGATGCAGGGGAGGGGCATAAACGAGAAGAGGCGGAGCTACGGCGCTCCCTCAGTGATGTCACCAAGGAGAGGGACGCtctcagccaatcaaacagccaGCTGAGGGAAGCCCTGAGAGCAGCAGAGACTGAGAGAATCAGTGTGAAGCGTGTGTGTGAGGAGCAGCAGCAGAAGCTGTGTGTGCTGGAGGAGTGTGTGTCGTCTGCGCAGACGGAGGTGTCGGAGCTGCGCAGCTGCCTGCGGGAGGTGGAGAATCCAGACTGGAGGCCCGTAGGGAGATGCAGGAGCTGCGCAgacagctgAAGGCTCTGGACAGTGAGTgtgtgcagcagcagcagcagtgcgGGGATCTCCAGgcgcgtgtgtgtgtggagcagcaGAAGCAGCAGCAGTGCAGTCGAGAGCTGATCACAGTAAAGCAGAAACTCGCAGACGCAGACACcgccacacacacactgcagaaagagcTGTCGCTCCTGCAGCGGCGTCTGGCCGAGAGCGAGGCGTGTTTGCGCAGTCGTGAGCGTGAGCTAGCGTCACAGCTACAGGAGGCTAGCGGCGCGCAGCAGAAGCTCCAGGACGAGGTGTGTAAGCTGAGCGTGCGCTCACAGACGGCTGCAGACGCGGCTGCACAGGTGCAGCTGGAGCTCAGTGCGGCACAGGGTCGACTGGCAGCCACGGAGGCGGAGCTTTCACGAGCGGAGGCGGGGCGTCGTGACCTGGAGTTCCGCCTTTCCAGTCTGCAGTCGACGCTCACTCGTACGCTAGGCATCGGCGCCAGTGGGCGGAGCAGCAGCAGAGGGCGGAGTCCCACAGGCTCCTCCCCTTCCTCTTTGACCTCAGGGATGATGTCTCGCCATCGGAGCGTGTCTCCGCTGCGCTGCTCACTATCGCCACCTAAAGATGTGGCCAATCACGTGTCTCCTGATAGCTCCATGATGCTGCGGCCGCTGTCTCCAGAGCGCAGTGATGCCCCGCTGCCCGTCGCCCTGCCCGACCTGGAGCCGCAGGAGCTGCGCAGCCGTCTGAGGGAGTTCCTGCTGGAGCTGCGGGAGGCACAGAGGGAACGGGACGAGGTGAGGGGTCAGCTGGGGTCACTGCAGGGGGAGTTACAGGAAGTGACAGGAGAGAGAGACTCCGCCCACGAGCGCCTCACTCAGCTGCACAACACACTGCAGGAATGCCAAgaggagaagCGTGCAGCGGATGCTAAGCTGTCGTCGGCTGAAGCGCAGCTGCAGGAGCGTGACGAGTGTATGCGGAGAGCAGAGCGGGAGCGGCGAGCGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAACACTGCCGTATGATTGTAGCTGCTATGCTAATGTTAGCACATGTCGCCCCCTGCAGGAGCAGTGCAGTCAGCTGCGCGCGGGAGAGGCGCGGCTGGAGGCGGAGCGGCGGCGGCTGTGGGAGGCGCTGGAGGCTGCAGAGGGGCGGGGCACACGGGTGGAGCTGGGGAGGAGGAGTCTAGAGGGAGAGCTGCAGCGAATCAGACGGAGTCTGGCTGAGAAGGAGGCGGAGATTCAGACGGCACACCAGAAACTCGACAGCGCCACCAAACAGgtgTCGGAGGCGGAGCTGCGCGTCTCCTGTCTGCAGCGGGAGCAGGAGCGTCTGACTCTGCAGCTGTCGAAAGCTCAGGATGGGGAGCGTCTGCTGCAGGAGCGAgtgctgtctctctctcacaGCCTGCAGGAGGCCACAGACGCTCACAGCGCCACCCACAGCCGTCTCACTGCACTGCAGAAGAGCCTGAGCCAGGCGGAGGGAGAGCGCAGACAGCTGCaggagcGTGTAGATGCACTCAGAGCCTCTGCTGCAGACGGGAAGCGCAGTACAGACTCCCTCACTGAGCGCGTGCAGACGCTGCAGACGGAGCTGAAGCAGAGCCAGCAGAGCAGAGCAGATCTGGAGACGcagctgcacagcacacagcAGGCTCTGCGTGTGCGCTCCGAGACTCTGGCCGCGGCTCAGCTCGGTCTCCAGGCTGCGCAGATAGACAGGTCGGCTGCTGAGGAGCGTCTGCGCAGTCTTCAGAGAGCTGTCGCCCTGCTGGAGACCGAGAAGAGGGATGCAGAGAGACAGGCTGTGAGGATGGAGAAAGACAGGGCGGCACTCAGGAGCACACTGGacaagGTGGAGCGTCAGAAGCTGCAGACGGAGGAGAGCAGTGTTCGTCTGAGTGTGGAGAAGAGTCGCCTGGACCGATCACTCAACAGCACAGAGCAGGAGCTGCaggacgcacacacacagatcacactgctgcagGCTCAGCTGGTGGAGATGGAGCAGAGTCACTGCGGCTGCGAGCACCAGAGCCGTCAGCAGGAGGAGGCGGAGCGGGAGGCGGAGCGACTGCGGGTCAGCCAGAGAGAGGCGGAGCGCACGCTAGCGGCCCGCGAGAGAGCACACCGGCAGCGGGTCAGAGGTCTGGAGGAGCAGCTCAACACCCTGAAGGAGCAGCTGCAGCAGGAGATCCGGAGGAGGAGTCCGGCACTGCCCCCTGCGCTCAGCTGA

Function

GO:

id name namespace
GO:0140053 mitochondrial gene expression biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0071439 clathrin complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041933 True 3053 lncRNA 0.60 13 27146 36116

Neighbor

gene id symbol gene type direction distance location
XLOC_020640 mrpl20 coding downstream 16320 9165 ~ 10826 (-)
XLOC_020639 atad3 coding downstream 20096 5156 ~ 7050 (-)
XLOC_020642 CABZ01085140.1 coding upstream 8249 44365 ~ 50878 (-)
XLOC_020643 CABZ01085139.1 coding upstream 20528 56644 ~ 57177 (-)
XLOC_020644 CABZ01101813.1 coding upstream 40353 76469 ~ 80533 (-)
XLOC_020645 ndufaf3 coding upstream 49481 85597 ~ 94519 (-)
XLOC_020646 NA coding upstream 64966 101082 ~ 101447 (-)
XLOC_020657 NA non-coding upstream 277594 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 356503 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 623801 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 664097 700213 ~ 704907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00630683_00632213 CROCC coding CI01000186 null 630683 ~ 632227 (+)