XLOC_020640 (mrpl20)


Basic Information

Item Value
gene id XLOC_020640
gene name mrpl20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9165 ~ 10826 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040838
ATTGAGGTCACACATGAAGCGTCAGTTCACACACACTTGCTGAAACTCGGGGATCGATCACACTGATTGATCATCATGGTGTTCCTCACGCTCTCCTGCTGGATCCGGAACCGCGGACCCGACCGATACTGGAAGGTGCAGGAGCTGCTGAAGAACGCGCGgCATTTCCGCGGCAGGAAGAGCCGCTGCTACAGTCTGGCGGTGCGTGCGGTGCGCAGGGCCTTCGTTTACGCCAGCAAAGCACGGAAAGCCAAGAGACGCAGCATGAGACAGctaTGGATCACACGGATCGCCGCCGCCACCAGAGAACACGGCCTGAAGTATCCAGCTCTCGTACACCAGCTGCTGAAGtgCAGTGTTCTGCTGAACAGGCGTATGCTGTGTGATCTGTCCATCACGGAGCCGCGCTCCTTCCTCTCTCTGAGCAGGCTGGCGCGGGCGCGGCAGCAGGAGGGTCTGAGGGCGGCGCTGGGGTCCGGAGCAGAGCCGCCGGGGGTCTTCTCACGTATCACTCAACTACACTGAGCTGACCCCAGACCTGCgctacacacacatatgcacatgtgctgctgtgtgtgtcCTGTAAataagtgtctgtgtgtgtgtgtgtgtgtgtgtgttcatgatgTCAATTAAACATGTTCTTATTT

Function

symbol description
mrpl20 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-5299 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20).

Ensembl:

ensembl_id ENSDARG00000090462

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040838 True 650 mRNA 0.57 4 9165 10826

Neighbor

gene id symbol gene type direction distance location
XLOC_020639 atad3 coding downstream 2115 5156 ~ 7050 (-)
XLOC_020641 NA coding upstream 16320 27146 ~ 36116 (-)
XLOC_020642 CABZ01085140.1 coding upstream 33539 44365 ~ 50878 (-)
XLOC_020643 CABZ01085139.1 coding upstream 45818 56644 ~ 57177 (-)
XLOC_020644 CABZ01101813.1 coding upstream 65643 76469 ~ 80533 (-)
XLOC_020645 ndufaf3 coding upstream 74771 85597 ~ 94519 (-)
XLOC_020646 NA non-coding upstream 90256 101082 ~ 101447 (-)
XLOC_020657 NA non-coding upstream 302884 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 381793 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 649091 659917 ~ 697504 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00659009_00660385 MRPL20 coding CI01000186 null 658706 ~ 660444 (+)