RNA id: TCONS_00040838


Basic Information

Item Value
RNA id TCONS_00040838
length 650
RNA type mRNA
GC content 0.57
exon number 4
gene id XLOC_020640
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9165 ~ 10826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGAGGTCACACATGAAGCGTCAGTTCACACACACTTGCTGAAACTCGGGGATCGATCACACTGATTGATCATCATGGTGTTCCTCACGCTCTCCTGCTGGATCCGGAACCGCGGACCCGACCGATACTGGAAGGTGCAGGAGCTGCTGAAGAACGCGCGgCATTTCCGCGGCAGGAAGAGCCGCTGCTACAGTCTGGCGGTGCGTGCGGTGCGCAGGGCCTTCGTTTACGCCAGCAAAGCACGGAAAGCCAAGAGACGCAGCATGAGACAGctaTGGATCACACGGATCGCCGCCGCCACCAGAGAACACGGCCTGAAGTATCCAGCTCTCGTACACCAGCTGCTGAAGtgCAGTGTTCTGCTGAACAGGCGTATGCTGTGTGATCTGTCCATCACGGAGCCGCGCTCCTTCCTCTCTCTGAGCAGGCTGGCGCGGGCGCGGCAGCAGGAGGGTCTGAGGGCGGCGCTGGGGTCCGGAGCAGAGCCGCCGGGGGTCTTCTCACGTATCACTCAACTACACTGAGCTGACCCCAGACCTGCgctacacacacatatgcacatgtgctgctgtgtgtgtcCTGTAAataagtgtctgtgtgtgtgtgtgtgtgtgtgtgttcatgatgTCAATTAAACATGTTCTTATTT

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-5299 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20).

Ensembl:

ensembl_id ENSDART00000125700

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041933 lncRNA upstream 16320 27146 ~ 36116 (-) True XLOC_020641
TCONS_00042226 lncRNA upstream 90256 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041934 lncRNA upstream 121946 132772 ~ 134339 (-) True XLOC_020647
TCONS_00040846 lncRNA upstream 149751 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042227 lncRNA upstream 302884 313710 ~ 315374 (-) False XLOC_020657
TCONS_00040837 mRNA downstream 2115 5156 ~ 7050 (-) True XLOC_020639
TCONS_00040839 mRNA upstream 33539 44365 ~ 50878 (-) True XLOC_020642
TCONS_00040840 mRNA upstream 45818 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040841 mRNA upstream 65643 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040842 mRNA upstream 74771 85597 ~ 94352 (-) False XLOC_020645
TCONS_00040843 mRNA upstream 79163 89989 ~ 94519 (-) True XLOC_020645
TCONS_00040857 other upstream 334092 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 802094 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 1147243 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1219080 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3584442 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00659009_00660385.mRNA True 812 mRNA 0.50 4 CI01000186 658706 ~ 660444 (+)