XLOC_020667 (bysl)


Basic Information

Item Value
gene id XLOC_020667
gene name bysl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 550828 ~ 557965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040868
ctctcagcgCCATTGCTCTCAGACCCACGTGTGTGCAGCTCTCCGCGGCGCGTCATGTGTTCAGACGCGATTTCACACTCATAATTCctcagacagacaggcagataatACTAATATTGATAACCGTCATCATGCCGAAGGTGAAGAAGGCCTGGAGCGGCGGCGCGGTGCCCCTGGCCGAGCAGATCCTCCAGCGGGACTCAGTGCGCTGCAGCGGCCGGCAGAAGCAGCGCGGCCGCGGGCAGGAGGAGCAGCAGGAGTTCGTGGATGAGAAGCTGAGCCGGAGGATCCTGGAGCAGGCCCGCAGACAGCAGGAGGAGCTGCAGGACACAGCCGAGGAGGAGCGCAGGACACCGGCGACCAGACTGGggccGGTGTCTCAGGATGGAGACTCTGATGAGGAATGGCCGGCTCTGGGTGAAGCCATGGACGAGGTGGAGCCAGAGGTGGAGGTGGACCCGGAGGACGAGCAAGCCATACAGATGTTCATGAGCAAAAACCCGCCGATGcgACGCACACTGGCCGACATCATCATGGAGAAGATCACGGAGAAGCAGACGGAGGTGGGGACGGTGTTGTCGGAAGTGTCGGGTCACGCGATGCCTCAGATGGACCCGCGAGTGGTGGAGGTGTACAGAGGGGTCAGCAAGGTTCTGTCGAAGTACCGCAGTGGGAAACTGCCCAAAGCCTTTAAGATCATCCCAGCTCTGTCCAACTGGGAGCAGGTGCTGTACCTGACAGAGCCCGAGACCTGGAGCGCCGCCGCCATGTACCAGGccactaggattTTCTCCTCGAACCTGAAGGAGCGAATGGCCCAGCGCTTCTACAATCTGGTGCTGCTGCCCAGAATCAGAGACGACATCGCGGAGTACAAGCGGCTCAACTTCCACCTGTACAGCGCTCTGAAGAAGGCCCTGTTCAAACCCGCAGCCTGGTTCAAAGggatcCTGCTCCCGCTCTGTGAGTCCGGCTCATGTACACTGAGGGAAGCCATCATCATCGGCAGCATCATCACCAAATGCTCCATCCCCGTGCTGCACTCCAGCGCTGCGATGCTGAAGCTGGCTGAGATGGAGTATAACGGAGCCAACAGTATTTTCCTGCGTCTGATGCTGGATAAGAAGTACGCTCTGCCGTTCCGCGTGCTGGACGCGTTAGTCGCGCACTTTCTGTCGTTCCGCACGGACAAACGGATCCTGCCGGTGCTGTGGCATCAGAGCCTGCTGACGCTGGTGCAGCGCTATAAAGCAGACCTGTCCTCCGAGCAGAAGGAGGCGCTGTTGGAGCTGCTGAAGGCCCACACACACCCGCAGATCTCCAGCGAGATACGCAGAGAACTGCAGAGCGCCGAGCCTCGAGACCTGGAGGACGCCACGCCGGCCATGAGCCTCGACTGACGGACTAACATGAGATTTGACAGTGCAGTGTGTGTCGCAGTCATGTTTCTGGACTGATTGGGTTATTCTGGTATTACATCAGGTCATTAAATTGTGTTATACTA

Function

symbol description
bysl Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytoplasm and nucleolus. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human BYSL (bystin like).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1287 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytoplasm and nucleolus. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human BYSL (bystin like).

Ensembl:

ensembl_id ENSDARG00000001057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040868 True 1504 mRNA 0.59 7 550828 557965

Neighbor

gene id symbol gene type direction distance location
XLOC_020666 ccnd3 coding downstream 3068 537717 ~ 547760 (-)
XLOC_020665 dstyk coding downstream 44306 472327 ~ 506522 (-)
XLOC_020664 NA coding downstream 154928 392619 ~ 395900 (-)
XLOC_020663 CABZ01072989.1 coding downstream 158604 387073 ~ 392224 (-)
XLOC_020662 ora3 coding downstream 167873 381143 ~ 382955 (-)
XLOC_020668 tmcc2 coding upstream 33844 591809 ~ 600016 (-)
XLOC_020669 cdkn1a coding upstream 45417 603382 ~ 607812 (-)
XLOC_020670 srsf3b coding upstream 55300 613265 ~ 622967 (-)
XLOC_020671 apobec2a coding upstream 83377 641342 ~ 651719 (-)
XLOC_020672 NA coding upstream 101952 659917 ~ 697504 (-)
XLOC_020657 NA non-coding downstream 235448 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 449381 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 514712 27146 ~ 36116 (-)
XLOC_020673 NA non-coding upstream 142248 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 175279 733244 ~ 735244 (-)
XLOC_020676 NA non-coding upstream 181335 739300 ~ 760886 (-)
XLOC_020684 NA non-coding upstream 460380 1018345 ~ 1023531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01111264_00004416_00006717 BYSL coding CI01111264 null 4416 ~ 6717 (+)
bowfin (Amia calva) AMCG00014035 NA coding CM030125.1 CM030125.1 49697861 ~ 49703373 (-)