LOC110502417 (LOC106561684)


Basic Information

Item Value
gene id LOC110502417
gene name LOC106561684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95097379 ~ 95124547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959906.1
TTCATCTACTGTAAATGTAACCTTTATCCCTTTGAGTTTGCTGAAGCTTGTTGCTTGGATAcacacactgcgcccggcccgtctCCAAATGAGTTTACGCACCAGAAATGATCGACTCATGGCAACAATCTGAAAGCATAACACCGACAATACAAACCACGGCTTCTAAAAATAGATTGCGGTTTGAGCGCTTGATATTTTGCAAAAACGAGTAATGCGGCACAAGGTGGTCGCGGTCACCCAGTGCGCAGAGCGAGCGCAGTAACTTGAGATGAAAGGCTTGGGGACATAATTGGATGagaattgtttacagagaaaGTGGTTATTCGATTCTGGCCTGCTTCCGTTATGGACCATTTGCTGAGTGAGGAGATCAGTAGTGTTCCCATGCCAGGCTATTGActcatgatttatattttatgtagCCTTTTAAATGGCTGCTTTTCTTATTGTTTATACATGTCTAATAATGTTATATCGAGCAACTAGTGTCACTGTGTCGATTTGTAAATGACAACGTGATCATCTATTTGACTTAGATTATACATACTATTTCCTCTCCTACTATAACCTTGAAATAGGCCTATTATGATGGAAGACAAACAGCCTCAATAAAAGTTAGTAGCATATACTCTCCAGAGTTTAAGCACTACGCTCCTCCTATCTTGTCACTTGAGAAATGAAGATAGGACGGGCTTAGTTTTCTCTATTGAGGTCAAGCAGCTCCACAAAGTGCCTAATAGCTCATTATTGGCTCAGCTGCCTGTCTGCCTCGAGCACAGTTTCAGAATGTGGCCACTGGAGGCTCCCAGCAGTTTATGCGTCACTTCATTCCGAACGCCGATGATGGCGGAGCTCGAGATAGTGCAGCCTGAACCGGAGGCGCCCGAAGTTCTCAATGGGGACGCCGACGAAAACGAAGCGAAAGAGGACGCGGAGCCCTCCGAAACAGGGaagaaaaagagaagaaaaaagaagaagaagaagaccgcTGTCCCAGCAGGGACAAATGAGTCTGAGGGGGATGGAGATACGGGAGGAGGTGTTGGTGATGTGACGAAACAGTTGGAGCAGCAAGCCCTGCCCGAGGACATAGATAAGGAGGATGATGGAGAGGAGGATGGAGAAGAGGGTGAAAACTCCgcagggaagaagaagaagaagaagaagaagaataagaaGAGAGTGAAGGGGCAGACTGACCCTCCCACTGTCCCTATTTGTGAGCTGTATCCCAGTGCTGTCTTCCCAAAGGGAGAGGAATGTGAATATCCTCCATCTAAAGACGGgcgCAGTGCAGCGTGGCGGACCACCCACGAGGAGAAGAGGGTCCTTGACAAGGCCAACGAGGAGATGTGGAGCGACTTCCGTCAGGCTGCCGAGGCCCACAGACAGGTCCGAAACTACATCAACACCTGGATCAAACCTGGGATGACCATGATCGACATCTGTGAACGACTGGAGGACTGCAGTAGGAGGCTGATCAAAGAGAACGGTCTGAAGGCTGGCCTGGCATTCCCCACTGGCTGCTCAATCAACCATGTTGCTGCCCACTACACTCCTAATGCTGGTGACCCCACAGTCCTGCAGTACAACGACGTCTGCAAGATAGACTTCGGCACGCACATCAACGGTCGAATCATTGACTGTGCCTTCACCGTGACCTTCAACCCAAAGTACGACAGATTACTGGAGGCTGTGAGAGATGCTACCAACACAGGCATCAGGTGTGCGGGGATAGATGTGCGTCTGTGTGACGTGGGTGAAACCATCCAGGAGGTCATGGAGTCTTATGAGGTGGAGATAGATGGGAAAACATACCAAGTAAAGCCAATCAGGAACCTCAATGGCCACTCCATCGGCCAGTACAGGATACATGCAGGCAAGACTGTCCCCATCGTCAAGGGAGGAGAAGCTACCAGAATGGAGGAAGGTGAGGTGTACGCAATCGAGACGTTTGGCAGCACTGGGAGGGGAGCTGTTCACGGTGACATGGACTGCTCGCATTACATGAAAAACTTCAACGTTGGACACGTGCCAATAAGGCTCCCCAGAGCTAAGCATCTGCTCAACGTGATCAACGACAACTTCGGGACGTTGGCGTTTTGCCGCCGCTGGTTGGACCGGCAGGGAGAGAGCAAGTACCTGATGGCCCTGAAGAACCTGTGTGACCTGGGCATCATAGACCCGTACCCTCCTCTCTGTGACACCAAGGGCTCCTACACTGCCCAATACGAACACACCATCCTTCTCAGGCCCACCTGTAAGGAAGTGGTGAGCAGGGGTGATGACTACTGAGTACGTTCCCGTGGGCCAGCTGGCCTCGAACCAGGAAGAACAGGAAGACAAAGAATGAGAGAAGATACAGTATATCagaaaagtgagtacacccctcacatttttgtaaatatttgagtatatcttttcatgtgacaacactgaagaaatgacactttgctacaatgtaaagt

Function

NR:

description
PREDICTED: methionine aminopeptidase 2-like isoform X1

GO: NA

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959906.1 True 2471 mRNA 0.49 11 95097379 95124547

Neighbor

gene id symbol gene type direction distance location
LOC110500368 LOC105021811 coding downstream 76950 95015675 ~ 95020429 (-)
trnay-gua NA coding downstream 87688 95009602 ~ 95009691 (-)
LOC110500345 LOC106561680 coding downstream 122466 94959918 ~ 94974913 (-)
LOC110500320 LOC106604557 coding downstream 316011 94777558 ~ 94781368 (-)
LOC110500283 gdi2 coding downstream 410558 94665928 ~ 94686821 (-)
LOC118944198 NA coding upstream 146546 95271093 ~ 95271272 (-)
parietopsin LOC106561711 coding upstream 503902 95628449 ~ 95632062 (-)
LOC110502485 LOC106561707 coding upstream 511349 95635896 ~ 95664503 (-)
LOC110500466 nampt coding upstream 578812 95703359 ~ 95721115 (-)
LOC110533932 NA coding upstream 757584 95882131 ~ 95883679 (-)
G207278 NA non-coding downstream 1493 95095223 ~ 95095886 (-)
G207490 NA non-coding downstream 11198 95085888 ~ 95086181 (-)
G207487 NA non-coding downstream 16136 95081042 ~ 95081243 (-)
G207471 NA non-coding downstream 46872 95049884 ~ 95050507 (-)
G207462 NA non-coding downstream 76662 95020491 ~ 95020717 (-)
G207517 NA non-coding upstream 17394 95141941 ~ 95142815 (-)
G207519 NA non-coding upstream 22943 95147490 ~ 95147876 (-)
G207524 NA non-coding upstream 29651 95154198 ~ 95200654 (-)
G207533 NA non-coding upstream 48741 95173288 ~ 95174426 (-)
G207575 NA non-coding upstream 115976 95240523 ~ 95240886 (-)
G207340 LOC105021815 other downstream 321023 94762662 ~ 94776356 (-)
G207249 NA other downstream 467640 94629437 ~ 94629739 (-)
G207244 LOC100194703 other downstream 480147 94616915 ~ 94617232 (-)
G206750 NA other downstream 769196 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 783461 94313390 ~ 94313918 (-)
G207858 LOC106561692 other upstream 253176 95377723 ~ 95408714 (-)
G207959 NA other upstream 399421 95523968 ~ 95524227 (-)
G207884 NA other upstream 479681 95604228 ~ 95609786 (-)
G207876 LOC106561706 other upstream 557490 95680851 ~ 95686864 (-)
G208077 NA other upstream 704827 95829374 ~ 95832362 (-)

Expression


Co-expression Network