LOC110500713 (LOC106561713)


Basic Information

Item Value
gene id LOC110500713
gene name LOC106561713
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98313023 ~ 98352485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578235.2
ATCTCCATCTCTGTTGTCTGAGTAATAACAGAGCTGGTTTGGCGCTGACTTTCACTAGTGTCGTGTGCAGAGGACTTTAGTGGGACCAGCAGTGGCATCGTCTGTAAAGCAACGGCATTTTGGTTCCTTACCCCGGTAAACCTTCAGGGGGATTTCTTTGCATTCATTTGTTCAGTCTTCTGCAAGTCTCTGGAAAACATCTACTTCGTTTTATAACCAACCCCAGATGcggcagtgtgtgtgagagtgtgtgtgagagtgtgtgttcgCCAGTGCTTGAGAGAAAGGGTTCTTGCTGCAAGGGGAAAAGGAGAACGAAGAAACAAACGGTTTGGATTTTTTCAATTCAATTTTTTGCGGGGTGATTTTTTTTAGGAATGAACGCAGATACGTGCGTTTCATACTGTGATATGACATCCATAGATTCATATTATAACACGCCTTCGCCACACGGTAGGGATCAACAACCATCGGATCCCTTCAGAATATTCCAACCGAGTGAAACCAAATACAGCCCAACGTTCCTACCCAAAGGACAACAGGGTTACGAGGAGAAGTCTCGGAGTCCTTTCCAACAGGAGTGCCAGTCACTGGATGACGGCACAGAGGAGGGCAACAACTTCAACAAATACCACCTCTTCATGCAACGACCGACCTGCAAAACACCCCCGGAAGGCGAAAAACTCCACCAGGAAAGCGGAGGACACAACGACGCGCTCATCCCCTGCTATGCCAAAGACAACGGCGGTCTAACCGAATCTGAGCTGACCCCAAACACTGACTCTCCCGGGATGGAAGGTTCCTACCTGAACCTGAAGGAAccggggttaggggtcagaggtcagggctcCGACCACCTCTCCAGTCTCGTGGACAAAGGGAGCGAGGCAGCAGACAGCAACAAGGGAAAGAAGAGACGGAATCGCACCACGTTTACCTCCTACCAGCTGGAGGAACTAGAGAAGGTGTTCCAGAAGACACACTATCCAGACGTCTACGTTAGAGAACAACTGGCGTTGAGGACCGATCTGACAGAGGCTAGAGTACAGgTGTGGTTCCAGAACCGGCGTGCTaagtggaggaagagggagaggtttggTCAGATGCAGCAGGTCAGGACTCACTTCTCTACTGCCTACGAGCTACCCCTCCTCACCAGGCCAGAGAACTACACACAGATCCAGAACCCATCGTGGCTAGGTGTTGGCAGCGGTGTCTCTCCTgtacctggctgtgtggtgccctGTGACGGGTCAGTCACCTCCTGCATGCCTCCCCACCCTCATGGAGGGGTCTCCGACTACCTAGGCGTGCCCAGCCCGGGCGTAATGGGGCATGAGGGTCACATGGGACAGACACACATGGGAAGTCTCTTTGGGGCTGGAGGAATGGGCGGAGTGGGTGGCGGTCTCAGCGGTTACGACCTGACCAGTGTCGACCCAGACAGAAAGTCTTCTAGTATCGCAGCGCTGCGCATGAAAGCTAAGGAACACAGCGCTGCCATCTCCTGGAACACATGATGCTATGGGAACTTTCCTGGGTCTGGCCCCACCCTGGTCAGACACGCCCTAACCCTGCCTCCTCATCCATACTCTCCTGAACCTGGACAAGGCCATGCCCAGTActgggaaggaggaagaggaggagcaggacgaGGAGGAAGGTCAGGATGGGACTACGACTACGCCACCTGATAGCACTAATAATACCAAAGCAGGTGAAATGAATGAACTACAACCCGAGACGACAGGAGAGACCATCACAGGAAACGATTCAGCAGCTTTAGAATGATACCAACAATGACGTCACCATGGCAATCAGCAGGAGACGCTGAGAAAAGAAGACGCTAGACAGAGGGAGTGGTGCTACTTGATCTCAGACCTCTGAAGGGGGAACGTGCCATTTTCCCTTTCcctctttattctctatgcccaTCAACCATGTGCCTCTTTATTCTCTATGGCCACCCCCCTGTGTCTCTTTATTCCCTAAGCCCACCACCctgtgtctctttattctctatgcccaccaccctgtgtctctttattctctatgcccaccaccctgtgtctctttattctctatgcccaccaccctgtgcctctttattctcta

Function

NR:

description
PREDICTED: homeobox protein aristaless-like 4

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578235.2 True 2115 mRNA 0.52 4 98313023 98352485

Neighbor

gene id symbol gene type direction distance location
LOC118936884 NA coding downstream 168012 98127948 ~ 98145517 (-)
LOC118943870 NA coding downstream 552223 97759882 ~ 97761086 (-)
LOC118944211 NA coding downstream 555360 97757564 ~ 97757663 (-)
LOC118944208 NA coding downstream 557296 97755630 ~ 97755727 (-)
LOC118943868 NA coding downstream 589840 97699305 ~ 97723186 (-)
lmo2 rbtn2 coding upstream 71530 98424015 ~ 98426658 (-)
LOC110500720 LOC106561717 coding upstream 122249 98474734 ~ 98513861 (-)
edc3 LOC106561715 coding upstream 169513 98521998 ~ 98535690 (-)
LOC110500748 LOC106561725 coding upstream 235431 98587916 ~ 98601250 (-)
LOC110502529 LOC106584711 coding upstream 290505 98642990 ~ 98689136 (-)
G210195 LOC106600457 non-coding downstream 11610 98301093 ~ 98301413 (-)
G210188 NA non-coding downstream 16364 98296410 ~ 98296659 (-)
G210176 NA non-coding downstream 33483 98279191 ~ 98279540 (-)
G210175 NA non-coding downstream 38035 98274774 ~ 98274988 (-)
G210174 NA non-coding downstream 39177 98271116 ~ 98273846 (-)
G210243 NA non-coding upstream 13953 98366438 ~ 98366675 (-)
G210521 NA non-coding upstream 26674 98379159 ~ 98379385 (-)
G210523 NA non-coding upstream 29746 98382231 ~ 98382494 (-)
G210528 NA non-coding upstream 50650 98403135 ~ 98403367 (-)
G210536 LOC106561714 non-coding upstream 85415 98437900 ~ 98451690 (-)
G209841 NA other downstream 693811 97618859 ~ 97619212 (-)
G209802 NA other downstream 810629 97501172 ~ 97502394 (-)
G209560 NA other downstream 895835 97416821 ~ 97417188 (-)
G208658 NA other downstream 1890799 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 565963 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 589989 98936783 ~ 98944041 (-)
G210765 NA other upstream 673247 99025732 ~ 99026118 (-)
G211127 NA other upstream 770748 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 1263191 99615676 ~ 99619142 (-)

Expression


Co-expression Network