G106143


Basic Information

Item Value
gene id G106143
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2756008 ~ 2756799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119880
ctctctctctctctctctctctctctctgtctctctctgtctctctctctgtctgtctctctctgtctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctgtctctctct
>TU119881
gtctctctctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctgtctctctct
>TU119882
gtctctctctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctctctgtctgtctctctgtctgtctctctctctctctgtctgtctctctctctctctctctctctctctgtctctctgtctctctctctgtctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119880 False 310 lncRNA 0.30 3 2756008 2756799
TU119881 False 228 lncRNA 0.48 3 2756316 2756799
TU119882 True 311 lncRNA 0.41 2 2756316 2756666

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 335387 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 578012 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 635553 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 854560 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 902438 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 221437 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 221987 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 650388 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1293984 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1309193 4065992 ~ 4085680 (+)
G106124 NA non-coding upstream 33647 2721053 ~ 2722361 (+)
G106120 NA non-coding upstream 40604 2715052 ~ 2715404 (+)
G106107 NA non-coding upstream 73721 2681933 ~ 2682287 (+)
G106057 NA non-coding upstream 109830 2644902 ~ 2646178 (+)
G106080 NA non-coding upstream 122246 2632915 ~ 2633762 (+)
G106151 NA non-coding downstream 13186 2769985 ~ 2770484 (+)
G106152 NA non-coding downstream 14927 2771726 ~ 2772614 (+)
G106164 NA non-coding downstream 28814 2785613 ~ 2785963 (+)
G106170 NA non-coding downstream 55032 2811831 ~ 2812589 (+)
G106194 NA non-coding downstream 115523 2872322 ~ 2872918 (+)
G106122 NA other upstream 37483 2717961 ~ 2718525 (+)
G106019 NA other upstream 228036 2520716 ~ 2527972 (+)
G105042 NA other upstream 1045451 1708969 ~ 1710557 (+)
G105036 NA other upstream 1055577 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1403145 1309202 ~ 1390936 (+)
G106240 NA other downstream 218024 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 449998 3006312 ~ 3391033 (+)
G106575 NA other downstream 882635 3639434 ~ 3800352 (+)
G106595 NA other downstream 919466 3676265 ~ 3677850 (+)

Expression


Co-expression Network