G107580


Basic Information

Item Value
gene id G107580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4305312 ~ 4305573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122100
ATTTAAAAGTGGTTTTCGGGAAAGAAACATGTTTATATTCGGCTGCCATTTGGAATGATTTTCCAAAGAATTTGAAACCTTATAACCTCAATAGGTAGTTTCAAGATCTCACTGAGCAAAATGGCTAAATAGTAGCATGTCTCAAAAGTGAATGTTGAGATTAAAGTAGGTGACAGAGAGGGAAATGCTGGGATAGCATGTGGTCTGCCTTTTTGGTGCCTGTTGCTTATTATATTGTGATTGTCTtgtgtgagatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122100 True 262 lncRNA 0.36 1 4305312 4305573

Neighbor

gene id symbol gene type direction distance location
deptor deptor coding upstream 2776 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 185570 4113122 ~ 4119742 (+)
mal2 mal2 coding upstream 219632 4065992 ~ 4085680 (+)
colec10 LOC106591867 coding upstream 239705 4050783 ~ 4065607 (+)
mboat1 LOC106573215 coding upstream 883213 3350582 ~ 3487129 (+)
col14a1a col14a1 coding downstream 22410 4327983 ~ 4572381 (+)
LOC110520696 mtbp coding downstream 297385 4602958 ~ 4654733 (+)
LOC118937359 NA coding downstream 328930 4634503 ~ 4636138 (+)
LOC118937361 NA coding downstream 430084 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 842528 5148101 ~ 5176987 (+)
G106869 NA non-coding upstream 50376 4254102 ~ 4254936 (+)
G106868 NA non-coding upstream 52135 4252917 ~ 4253177 (+)
G106864 NA non-coding upstream 58070 4246739 ~ 4247242 (+)
G106860 dscc1 non-coding upstream 72842 4227286 ~ 4232470 (+)
G107581 NA non-coding downstream 136 4305709 ~ 4305999 (+)
G107582 NA non-coding downstream 615 4306188 ~ 4306575 (+)
G107611 NA non-coding downstream 43294 4348867 ~ 4349162 (+)
G107612 NA non-coding downstream 47668 4353241 ~ 4353525 (+)
G107613 NA non-coding downstream 48011 4353584 ~ 4353832 (+)
G106814 NA other upstream 166816 4137813 ~ 4138496 (+)
G106775 NA other upstream 277718 4027075 ~ 4027594 (+)
G106575 NA other upstream 504960 3639434 ~ 3800352 (+)
G106595 NA other upstream 627462 3676265 ~ 3677850 (+)
G107922 NA other downstream 438595 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 503166 4808739 ~ 4811575 (+)
G108048 NA other downstream 552338 4857911 ~ 4858274 (+)
G108280 NA other downstream 830783 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 990606 5296179 ~ 5299933 (+)

Expression


Co-expression Network