G108844


Basic Information

Item Value
gene id G108844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6228409 ~ 6228747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123804
TGCCAATGTTATGCGATAACACTGCCTCTTAATGACCTCACACTAGTCACTCAGGGGCTCCCGAGCGGCaaagctgtctaaggcactgcatctcagtgctataggcgtcactacagatcctggttcgattccaggctgtatcacaaccggacgtgattgggagtccaatagggtggcgcacaattggcccagcgtcatccgggttagggtttggccggggtaagccgacattgtaaataagaatttgttcttaactgccttgcctagttaaataaaaacgtTATGATTATCAATCTAATCCATCATACAGTCAATTTCCTCTGTCCCATAATCTGTATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123804 True 339 lncRNA 0.39 1 6228409 6228747

Neighbor

gene id symbol gene type direction distance location
LOC118937376 NA coding upstream 134469 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 178908 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 226144 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 248519 5978266 ~ 5979890 (+)
LOC110505637 LOC106573538 coding upstream 272964 5953886 ~ 5958813 (+)
ccdc12 ccd12 coding downstream 2622 6231369 ~ 6250042 (+)
cep72 LOC106573558 coding downstream 57811 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 149626 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 173929 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 316621 6545368 ~ 6629469 (+)
G108843 NA non-coding upstream 223 6227700 ~ 6228186 (+)
G108836 NA non-coding upstream 11767 6215252 ~ 6216642 (+)
G108829 NA non-coding upstream 24293 6203773 ~ 6204116 (+)
G108828 NA non-coding upstream 24877 6202315 ~ 6203532 (+)
G108805 LOC106594197 non-coding upstream 29068 6151712 ~ 6199341 (+)
G108845 NA non-coding downstream 371 6229118 ~ 6229353 (+)
G108861 NA non-coding downstream 37194 6265941 ~ 6266482 (+)
G108872 NA non-coding downstream 50514 6279261 ~ 6280039 (+)
G108876 NA non-coding downstream 52803 6281550 ~ 6281898 (+)
G108873 NA non-coding downstream 85852 6314599 ~ 6318260 (+)
G108775 LOC106606109 other upstream 170074 6056996 ~ 6058335 (+)
G108733 NA other upstream 327459 5900511 ~ 5900950 (+)
G108874 LOC106573552 other downstream 53324 6282071 ~ 6285940 (+)
G109020 NA other downstream 404331 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 627339 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 679800 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 712769 6941465 ~ 6944043 (+)

Expression


Co-expression Network