XLOC_021043 (cts12)


Basic Information

Item Value
gene id XLOC_021043
gene name cts12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 16406920 ~ 16419126 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041356
CTGGAAATGGAGAAAGACGGATGAGTCAGCAAACACCCCAGTAATAAAGGCCTTGCTGTGGTTGGTCTATACTTTGAGGATATAACATCAGTGCTGGTACGTTCATTAAATCCCAAACTGAAAAACAGCTCAGACCAAGCACTCTCAGACATTCAGACATTGCTGAATCAGTCATGATCTCATAACAAAAAGTACAGATATCATATGAACATCATATCTGATTTCCTAGAAGGATTTCGGGATGGCTTATGTATAGAAATGTTATTGTTTTGGTGACGTTATTGGTTATGGTTACACTTTTAACCATTTTGTTAATTAGCACCTTCCTCTTGCAGGATGACAATAGTGTGGACACACCTTCAGCTTGATGCTATAAAACACTGAAGACATGGGTCGGTTTCATTCCCAAAACCTCCGACAAACACTTTCAGCAGATCCTGCTCTTCAACATGATCGACACTTATCAGTCCAGCTGGGTGGCGCTGTTGGGCAGAACGGCAGTGTTTGCCCTCCTGGTGTGGGCTCCTGTGCAGGTGGCATCAGAATCGGAAGAAGAAGCCCCAACTGAGTGGAATCTGTGGAAGAAAAAACACGAAATATCCTACGACGAAGAGAGTGAAGATGTTCACAGAAAGACCATTTGGGAGACCAACATGCAGAAGATCTGGAAAAACAACAATGATTTCAGTTTTGGATTGTCAATGTTTAAAATGGCAATGAACAAATATGGAGACCTGACAAGTGTGGAGTACAAACGTTTGCTGGGAAGCAAAATCAAAGGCACAGGGAATAGAAAAGGAAAGATCACGTCTGCTCAGATGCTCCGCCTCAATGCCAAAAGACTGGGAGTGACCAATATCGACTATCGAGCGAAGGGATATGTGACCGAAGTCAAAGACCAGgGATACTGTGGGTCTTGCTGGTCCTTTAGCACTACAGGGGCTATCGAAGGACAAATGTACAAGCATACGGGACGGTTGGTGTCGCTCAGTGAACAGCAGCTGGTGGATTGTTCCAGGTCTTACGGCACGTATGGCTGCAGTGGAGCCTGGATGGCAAACGCTTATGATTATGTGATTAATAATGCATTGGAGAGCTCAGACACTTACCCTTACACATCAGTGgacACTCAGCCCTGTTTCTATGAAAAGAATTTGGCTATGGCTGGAATCAGTGACTACAGGTTCGTCCCGGCTGGAAATGAGCAGGCATTGGCTGATGCAGTGGCAACTGTCGGACCAGTCTCTGTTGCTATCGATGCTGACAATCCAAGCTTCCTTTTTTACAGTTCAGGAATCTACAAGGAATCCAACTGTAACCCTAACAATCTCAACCATGCTGTGCTGGTGGTTGGTTACGGCTCAGAGGAGGGCACAGATTACTGGATAATCAAGAACAGCTGGGGAACGGGATGGGGTGAAGGAGGCTACATGCGGATGATCCGCAATGGCAAAAACACATGTGGCATTGCCAGCTATGCTCTTTATCCCATTATTTGAAACAAACGATATGTTTTACAATAAGGTCTGTGTcacaaatcagtgtatttagcgGGTTTGACTTGTACAGAGCCGCACTTTAGTCTTGTTTGCAGTCCGACTTTAAGACAAGGCacttcaggtgaattgggtaaaaaaataaaactcctcCAGTAGATTAAGTTAAGaattccaaactttttttattgtcattttaataaatgctATATTTAAGTATGCAAATGAggttttatttcaataaatgtgctaatttgcatacatttctaacaTGGAAAT
>TCONS_00041357
GTTGCCATGGTGATTTTTGGAAGGGCGGGACAGGCGGACAGTCGTCATAAGGCCACAGAGACGCCAGTGACTGACAGAAAAACTCCATCAATTCCTTTTTCCGGCCACACGTTTGCTCATATATGTTGTGTTTAAGCAATGAAGACATTCGTGTTTACCTTGAAAGACATCCTGGAGTCTCAGGCGAGCTTCATCCTGCTGGTTTTGCGCGGTGTCCTTTATAACGTCTGTCCGCAGCGCTCATTCATCGCCCCTGAAGATCTGAATGAACGGATCTACGCTCTTGTTTACCGCAGATGACAATAGTGTGGACACACCTTCAGCTTGATGCTATAAAACACTGAAGACATGGGTCGGTTTCATTCCCAAAACCTCCGACAAACACTTTCAGCAGATCCTGCTCTTCAACATGATCGACACTTATCAGTCCAGCTGGGTGGCGCTGTTGGGCAGAACGGCAGTGTTTGCCCTCCTGGTGTGGGCTCCTGTGCAGGTGGCATCAGAATCGGAAGAAGAAGCCCCAACTGAGTGGAATCTGTGGAAGAAAAAACACGAAATATCCTACGACGAAGAGGTCGGTTATGGTCAGCTGGGCATGACTTAAAGgtacagtacacccaaaaatgaaagttcagtCATTATTAAACTCATATATTGAGAGCATGAGGGTGAccgaatgttcagttttgggtggaCTATTCCTTTAATTGAAAGGTTTGAATGATTGTTGTGCTCTGGGGATACTTAACCCTGTATAAACATACAGTTTACGTGTGTTGTTAAGATGATTATATGTCGCTCTATACACTGAATGTTTGTGTATTTCTCATGACGTTTGGCTTTTTAACCACAGAGTGAAGATGTTCACAGAAAGACCATTTGGGAGACCAACATGCAGAAGATCTGGAAAAACAACAATGATTTCAGTTTTGGATTGTCAATGTTTAAAATGGCAATGAACAAATATGGAGACCTGACAAGTGTGGAGTACAAACGTTTGCTGGGAAGCAAAATCAAAGGCACAGGGAATAGAAAAGGAAAGATCACGTCTGCTCAGATGCTCCGCCTCAATGCCAAAAGACTGGGAGTGACCAATATCGACTATCGAGCGAAGGGATATGTGACCGAAGTCAAAGACCAGgGATACTGTGGGTCTTGCTGGTCCTTTAGCACTACAGGGGCTATCGAAGGACAAATGTACAAGCATACGGGACGGTTGGTGTCGCTCAGTGAACAGCAGCTGGTGGATTGTTCCAGGTCTTACGGCACGTATGGCTGCAGTGGAGCCTGGATGGCAAACGCTTATGATTATGTGATTAATAATGCATTGGAGAGCTCAGACACTTACCCTTACACATCAGTGgacACTCAGCCCTGTTTCTATGAAAAGAATTTGGCTATGGCTGGAATCAGTGACTACAGGTTCGTCCCGGCTGGAAATGAGCAGGCATTGGCTGATGCAGTGGCAACTGTCGGACCAGTCTCTGTTGCTATCGATGCTGACAATCCAAGCTTCCTTTTTTACAGTTCAGGAATCTACAAGGAATCCAACTGTAACCCTAACAATCTCAACCATGCTGTGCTGGTGGTTGGTTACGGCTCAGAGGAGGGCACAGATTACTGGATAATCAAGAACAGCTGGGGAACGGGATGGGGTGAAGGAGGCTACATGCGGATGATCCGCAATGGCAAAAACACATGTGGCATTGCCAGCTATGCTCTTTATCCCATTATTTGAAACAAACGATATGTTTTACAATAAGGTCTGTGTcacaaatcagtgtatttagcgGGTTTGACTTGTACAGAGCCGCACTTTAGTCTTGTTTGCAGTCCGACTTTAAGACAAGGCacttcaggtgaattgggtaaaaaaataaaactcctcCAGTAGATTAAGTTAAGaattccaaactttttttattgtcattttaataaatgctATATTTAAGTATGCAAATGAggttttatttcaataaatgtgctaatttgcatacatttctaacaTGGAAAT
>TCONS_00041358
GGAAGTTCCTCAAAACAGGAAGTGCTACccatgatttaaaataaaagtcatgcTCGGAAATTGGTggatttatgtattaatttgatGTGGTCATTCTTAatccacatttttatttttattaggacACTCAGCCCTGTTTCTATGAAAAGAATTTGGCTATGGCTGGAATCAGTGACTACAGGTTCGTCCCGGCTGGAAATGAGCAGGCATTGGCTGATGCAGTGGCAACTGTCGGACCAGTCTCTGTTGCTATCGATGCTGACAATCCAAGCTTCCTTTTTTACAGTTCAGGAATCTACAAGGAATCCAACTGTAACCCTAACAATCTCAACCATGCTGTGCTGGTGGTTGGTTACGGCTCAGAGGAGGGCACAGATTACTGGATAATCAAGAACAGCTGGGGAACGGGATGGGGTGAAGGAGGCTACATGCGGATGATCCGCAATGGCAAAAACACATGTGGCATTGCCAGCTATGCTCTTTATCCCATTATTTGAAACAAACGATATGTTTTACAATAAGGTCTGTGTcacaaatcagtgtatttagcgGGTTTGACTTGTACAGAGCCGCACTTTAGTCTTGTTTGCAGTCCGACTTTAAGACAAGGCacttcaggtgaattgggtaaaaaaataaaactcctcCAGTAGATTAAGTTAAGaattccaaactttttttattgtcattttaataaatgctATATTTAAGTATGCAAATGAggttttatttcaataaatgtgctaatttgcatacatttctaacaTGG
>TCONS_00041359
TGAGTGGAATCTGTGGAAGAAAAAACACGAAATATCCTACGACGAAGAGAGTGAAGATGTTCACAGAAAGACCATTTGGGAGACCAACATGCAGAAGATCTGGAAAAACAACAATGATTTCAGTTTTGGATTGTCAATGTTTAAAATGGCAATGAACAAATATGGAGACCTGACTGGGAGTGACCAATATCGACTATCGAGCGAAGGGATATGTGACCGAAGTCAAAGACCAGGGGCTATCGAAGGACAAATGTACAAGCATACGGGACGGTTGGTGTCGCTCAGTGAACAGCAGCTGGTGGATTGTTCCAGGTCTTACGGCACGTATGGCTGCAGTGGAGCCTGGATGGCAAACGCTTATGATTATGTGATTAATAATGCATTGGAGAGCTCAGACACTTACCCTTACACATCAGTGgacACTCAGCCCTGTTTCTATGAAAAGAATTTGGCTATGGCTGGAATCAGTGACTACAGGTTCGTCCCGGCTGGAAATGAGCAGGCATTGGCTGATGCAGTGGCAACTGTCGGACCAGTCTCTGTTGCTATCGATGCTGACAATCCAAGCTTCCTTTTTTACAGTTCAGGAATCTACAAGGAATCCAACTGTAACCCTAACAATCTCAACCATGCTGTGCTGGTGGTTGGTTACGGCTCAGAGGAGGGCACAGATTACTGGATAATCAAGAACAGCTGGGGAACGGGATGGGGTGAAGGAGGCTACATGCGGATGATCCGCAATGGCAAAAACACATGTGGCATTGCCAGCTATGCTCTTTATCCCATTATTTGAAACAAACGATATGTTTTACAATAAGGTCTGTGTcacaaatcagtgtatttagcgGGTTTGACTTGT

Function

symbol description
cts12 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-336 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDARG00000042753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041356 False 1775 mRNA 0.43 8 16406920 16416882
TCONS_00041357 False 2014 mRNA 0.44 8 16406920 16419126
TCONS_00041358 False 769 processed_transcript 0.40 3 16406924 16408418
TCONS_00041359 True 859 mRNA 0.45 7 16407130 16412496

Neighbor

gene id symbol gene type direction distance location
XLOC_021042 lama3 coding downstream 3318 16382502 ~ 16403602 (-)
XLOC_021041 ttc39c coding downstream 28960 16350555 ~ 16377960 (-)
XLOC_021040 trmt13 coding downstream 89034 16311740 ~ 16317886 (-)
XLOC_021039 rtca coding downstream 115879 16282144 ~ 16291041 (-)
XLOC_021038 cdc14ab coding downstream 131684 16190231 ~ 16275236 (-)
XLOC_021044 plekhb2 coding upstream 13278 16432404 ~ 16443202 (-)
XLOC_021045 NA coding upstream 44467 16463593 ~ 16465739 (-)
XLOC_021046 stx6 coding upstream 63505 16482631 ~ 16494406 (-)
XLOC_021047 patj coding upstream 149997 16569123 ~ 16759151 (-)
XLOC_021048 si:dkey-38n4.2 coding upstream 238191 16657317 ~ 16658996 (-)
XLOC_021036 NA non-coding downstream 241718 16163930 ~ 16165202 (-)
XLOC_021032 NA non-coding downstream 376281 16028078 ~ 16030639 (-)
XLOC_021031 NA non-coding downstream 385005 16016082 ~ 16021915 (-)
XLOC_021030 NA non-coding downstream 492450 15913116 ~ 15914470 (-)
XLOC_021028 BX323550.3 non-coding downstream 624911 15781894 ~ 15782009 (-)
XLOC_021049 NA non-coding upstream 391112 16810238 ~ 16828113 (-)
XLOC_021051 NA non-coding upstream 585184 17004310 ~ 17009500 (-)
XLOC_021052 NA non-coding upstream 634077 17053203 ~ 17064683 (-)
XLOC_021054 BX649327.1 non-coding upstream 1006552 17425678 ~ 17425796 (-)

Expression


Co-expression Network