XLOC_021052



Basic Information


Item Value
gene id XLOC_021052
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17053203 ~ 17064683 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042380
CTTGGGTATTAATCTGCGGTTAAAAACACCGTTTGGTTGTAAATTATCTAGCAGaAGTGAAGAGATGGGGTGATGAGAAGGAAGATGAGTGAAGGTCAAGACAACAGTGCCGAGGACGCTGCTGGCTGACATGGGACATCTCACTGACAGCTTTGGCCGCCATTCATCGCCATTCTCTGTGATTAACTATGATGTGCCAGGATGAACATCACTGAGGAAAAGGAAGACAGCTTCATATTCAAGTATGCTACAGTACTTTCTTCATCAGCAGAGAGTGTGTTAAGTTTCTCATAGGTTTGCCGCCGTGTTTAGTGATCCAAACCTTCGGCTAAGGGTTACCTGTGGTGCTCCACTTCTCCTTTCCCAACAACGTTCCCAATATCTCTGGCTAAATCACATTCCTCAGCCTTCGTCACAATGGGAGAACTGTTTGATGGTttgtccctctctctctcttgcccATATCTCAGGTATTCCCCTTACTTAAGAACCCAAAGCACCCAGACCTCTCATAACCTCTGTCTCG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042380 True 526 lncRNA 0.46 4 17053203 17064683

Neighbor


gene id symbol gene type direction distance location
XLOC_021050 nfia coding downstream 822 16839467 ~ 17052381 (-)
XLOC_021051 NA coding downstream 43703 17004310 ~ 17009500 (-)
XLOC_021049 NA coding downstream 225090 16810238 ~ 16828113 (-)
XLOC_021047 patj coding downstream 294052 16569123 ~ 16759151 (-)
XLOC_021048 si:dkey-38n4.2 coding downstream 394207 16657317 ~ 16658996 (-)
XLOC_021053 nphs2 coding upstream 186592 17251275 ~ 17256573 (-)
XLOC_021054 BX649327.1 coding upstream 360995 17425678 ~ 17425796 (-)
XLOC_021055 NA coding upstream 387742 17452425 ~ 17454463 (-)
XLOC_021056 si:ch211-197g15.10 coding upstream 391028 17455711 ~ 17459587 (-)
XLOC_021057 si:ch211-197g15.6 coding upstream 396188 17460871 ~ 17463643 (-)
XLOC_021045 NA non-coding downstream 587464 16463593 ~ 16465739 (-)
XLOC_021036 NA non-coding downstream 888001 16163930 ~ 16165202 (-)
XLOC_021032 NA non-coding downstream 1022564 16028078 ~ 16030639 (-)
XLOC_021067 NA non-coding upstream 754140 17818823 ~ 17821448 (-)
XLOC_021073 NA non-coding upstream 1278629 18343312 ~ 18345189 (-)
XLOC_021074 NA non-coding upstream 1283395 18348078 ~ 18349774 (-)

Expression



Co-expression Network