XLOC_021055


Basic Information

Item Value
gene id XLOC_021055
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17452425 ~ 17454463 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042381
GCAGAATTTATGTTACTGTTTATTGAAACAACGAAAGGCGTGAATTAAATAAAGCAGACTTGTTGTCAAACATGAGACCAAGAAGCAGATATTTACTGTCAGATAGTTACTAGACAGACGACATCAGCAGGCTGAAACTGGGGAAATgacgaatgaatgaacattaaacCAGACGCACAGAAGCAATGACTCCTGTCCCGTAGACTGCGATATACACTGTGATatataaaaacctgtaaccatcagtAGAAACCCACAGGACAGCACTATTAGCTAATAATAATATGACATCTCTTTCTTAATTTGTGTAATCAGTTTGGCATCTTTAAATCACAGTTTGAacgaaataaaaatacaaaataggcgacaataattatttttttgtaaataaagctTGTTTACAATATGGCAACTTGTTAGTGTGACTAAGAGACATGCAGATTATTTCACTCTGCTTAGTGAAAATACACAGATACAGGTACATTGCTTTaatggacagttcacccaaaaagacaaaaagaaacAAACAAAATGTACTTCCTGACTCCGTATGGCTTTTGACTTCATCTGGAGACCTGGTTTGTGTTCCTCCTGAAAAGATGCTTGTGATTTTTACCACCTGTCACCTGTTTAACAACATAAAACGGGCACTATAAGTGATTGGCAGGTCGATATTGTGTGGCCACAACGTCAACGTTTGCTGATCAACACAACAATGGAAAACGGACGGATAGGGAATGCCTGGCTTCTTCAACGCATGGTTCATTTGCTCGTGTGCTTTTTCAGTACTCGACATTTATAAAGAGGACATTCATATTCCAAAAATCGTAAAAAATAATACGCGACGCTTCTCTTTCGGAACTGtacaagattaaaataaaaaaatcgacaTTTAGTTATACACATTTATATGACAAACCGCTTACATTTATTGTTTCTAAATAGAAAAACGAAACGATTTGTGTTAGCAGAATGCAGTATTCcctccaaaaacaaacaaaaaactaaatgtagaCCCTTTGTGATGTAATGCTTGCATGCTAGAGTGTTTACAAACAAAGTAAAGAAAATTGTAACTTGATCATTTTCATCATAGTACTGCTACTATCCACAAGGTGGCGTCGCAAGCTCAGGAAATAATAACAGACCATTAAGTGCATGTGGATGAGAGGTTGGTTCATTAGTCCATATGAGGGAATACTGCACTGCTGTTGTTGTGTTTCTAGTAGTGTTCGTTAACGCTCTGAAAGTCACACTCCTCCACCCTTTGGTTAAGCACTTGGCGAGTCCTACGGGCCCTCTTTGGGTGAGGAGGGTGACTGGTTACTGGCTGAGTTCTTGAGGGAGCCCAGCGTTTTACTGAACCATGAGTTTTTGGCAGCTTGGACCTCCGTCATCAATACGCCCCGCTGATGCTCCAGCTCCTGTAGATTAAAAAAGCAAATAGCATTAATAAAACTGTAAACTGGGAACATACACAGTGTACTAACTTTAGGAGATTATGgaaaaaagactaatataaatacTAAATTATGAGGGTAAAAAAAGTGCAGtatgaaaacaaatgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042381 True 1569 lncRNA 0.38 2 17452425 17454463

Neighbor

gene id symbol gene type direction distance location
XLOC_021054 BX649327.1 coding downstream 26629 17425678 ~ 17425796 (-)
XLOC_021053 nphs2 coding downstream 195852 17251275 ~ 17256573 (-)
XLOC_021052 NA coding downstream 387742 17053203 ~ 17064683 (-)
XLOC_021050 nfia coding downstream 400044 16839467 ~ 17052381 (-)
XLOC_021051 NA coding downstream 442925 17004310 ~ 17009500 (-)
XLOC_021056 si:ch211-197g15.10 coding upstream 1248 17455711 ~ 17459587 (-)
XLOC_021057 si:ch211-197g15.6 coding upstream 6408 17460871 ~ 17463643 (-)
XLOC_021058 si:ch211-197g15.8 coding upstream 13128 17467591 ~ 17474781 (-)
XLOC_021059 si:ch211-197g15.7 coding upstream 20571 17475034 ~ 17482810 (-)
XLOC_021060 si:ch211-197g15.6 coding upstream 30388 17484851 ~ 17489040 (-)
XLOC_021049 NA non-coding downstream 624312 16810238 ~ 16828113 (-)
XLOC_021045 NA non-coding downstream 986686 16463593 ~ 16465739 (-)
XLOC_021067 NA non-coding upstream 364360 17818823 ~ 17821448 (-)
XLOC_021073 NA non-coding upstream 888849 18343312 ~ 18345189 (-)
XLOC_021074 NA non-coding upstream 893615 18348078 ~ 18349774 (-)
XLOC_021077 NA non-coding upstream 1087542 18542005 ~ 18546649 (-)
XLOC_021078 NA non-coding upstream 1137236 18591699 ~ 18659957 (-)

Expression


Co-expression Network