XLOC_021050 (nfia)


Basic Information

Item Value
gene id XLOC_021050
gene name nfia
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 16839467 ~ 17052381 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041368
GCATGCCGAGCCCTCCTCGCTGCTCGTAAATCCGCCTCAGTTTTGCTTCGCACCGCCACATGCCTCACGGCGGATGCAAGCGAGCGCGCGACGCGGCGCAATAAGAGACAGCGAAGAATGAATCAAACGCGACTTTTCTAACGCATCCGGACGACTTTTTGCTTATCCTTTTTGTTCTTTTTCTATTCAAATGACCGCAAGATGAAATAATCGCTCTTCCCGGCGGGTTCACCACCACCAGTTTGACTCATGGCTCTGTGAAATCTCCGCGTACTTCCATCCATCCGTCGTCGGGACTTTTCTCTAGGCTGCAGTTGATGATAATGCCGAAAGTTTGGATATACGGCTttaacagtacagtacagtagatGTGTGTAACTCGAGGCGGGGTTAAAGTTCAGCTCTATGGAGCGCTGAAGCGTCGCGCGCACTTCGCAGAGTTGGAAATGTGAAAGCAAGAAGCAAGGCTTTATTTTCCCTCTCTCCCTTcttctctgtctctctttttttctcttttcatacacacacatatacatacacaccccatacattcacacatacacacaccctcacccacacgcacactcacgcgcgcacacacaacatATACATCGCCAATTCAAGAGTTAAAACCGACAGATATGTATTCTCCGCTATGCCTAAcacagGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGAAGAGGAGCGAGCCGTGAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCCGAGTTCCGCGAGGATTTTGTGCTCACCGTCACCGGGAAGAAGCCCCCTTGCTGTGTTCTCTCGAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCTCTTGAAAGTACTGACGGCGAAAGGCTGGTTAAGTCACCGCAGTGCTCGAACCCAGGGCTGTGCGTGCAGCCGCATCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTCGTCCATGCAGGAGCAGGGCAGTCTGACAGTCCGAACCAGCCCAGTGAAGGCGACATCAAGGACCAGCCAGAAAATGGGCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTAGTGCGAGTCTCACAGACGCCCATCGCGGCAGGGACGGGGCCCAACTTTTCGTTGGCAGACTTGGACAGCTCTTCCTACTACAGTATGAGCCCTGGGGCCATGAGGCGCCCCCTACCCAGCACTTCTTCTAGCAgTTCTGCAAAGCGAATCAAATGCATGGAGGATGAGGTGGACAGCCCGGGAGAGGAGTCCTACTACCCAGGTCAGGGACGCTCGCCTGGAAGCGGCAGCCAAGCCAGCAGCTGGCATGAAGTGGAGCCAGGGATGCCATCGCCTACCACATTAAAGAAGTCAGAGAAGTCTGGTTTCAGCAGCCCTGTGCCTTCGCAGACCGCTTCCCCCCGAACGGCATTCACACACCATCATCGACCTGTCATTACAGGACCCAGAGCGAGTCCACACGCCACGCCGTCAAGTCTTCATTTCCCGACGTCGCCAATCATCCAGCAGCCCGGCTCCTACTTCTCCCACCACGCCATTCGCTACCACCCACAGGAGACGCTAAAGGAGTTTGTCCAACTTGTCTGTCCTGACAGTGGTCAGCAGGCTGGACAGGTGGGCTTCCTTAATCCCAATGGGAGCAGTCAAGGGAAGGTGCACAACCCGTTCCTGCCCACCCCGATGCTGCCGCCCCCTCCACCGCCCCCGATGGCGCGACCCGTTCCTCTGCCCGTGCCAGACTCTAAACCTCCATCCACCTCCACTGACGGAGGAGGAAACTCACCCACTTCACCCACCTACTCCACACCGAGCACGTCTCCCGCTCAGCGTTTTGTCAGCGTGGGCCCCAGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCTCAGTGGTACCTGGGCTAAAGACTCCCGAACACGGACACACGGCCGCTCCGAGGTCACTCGACCACCCCCTCTGTCTCCCCTGAGTACGACCCGCAAACATGTACACCAGTCTGAACAGAGAGAAGCCACTTGCTGCCCCGTACCGGACAGACCCACAGCATGGCTCCAGCCGAACAACCCCGCCAAGCCCTGGAACAAGAGGAACCGCTTACACCCACTTACTATATATCTATATAGTCCAGATGTATTCTTCCATATGTATGGTTTACATGCCTATATTCATATATAGTAGCTGTCCAGCTCTTCTGAGGGTGGagctcagataaaaaaaaaaaacgaagagcttttttttgttttcctaattttttttttttgttttgaaaacgtgcacgttttatttttattttctgttcgtttgtttgtttttgttttttatggttCACCCTCACAGATAGACGAGGAAAAACGTAACATGACGCAATCAAAGAGCTTCCCGCTTCTGTGCCTGTGGTGTTAAAAAGAGAGGCGTTTCGAGATCAAAAACGCAGTCGACGGCCAAGGGTCGCGAACCCACAACCATCTGGAGGTCGGAGCTCTGCCTTTCAATCACTCGTGTTTCGACGCTGTTGGAGGTTTCGCCTGGGTCAGATTTACCACCAGCTAAAAAACAAACTAATCTAAACAAATGTGTATTGCGTCTTCTGGACCATTTGCTTCCCTTCCACCGCCATCATCACCACCACCGCCATCAAGGACTCAACCCCATTTTTatctgttgtttttgtcatttttggggCAGGCGATGAAGAAGTCATGAACGGTGATGTTTGATATCAGGTCATTTTACAGGAGATCTCCCCACTTGGAGGCATgttcatattttgtgtttttcttacaaaaaaaatgaggaaaaaaaagagagaaagtcaTAGTGATTGTTTCTACTAAACCCCAGCCGGAAGGTCTGTGGCACGCCAAGGGCCGAGTGAAGGTTCAATCTTCCAGAAACTTCAAGGGAAGGTTAACCGTGAATACTGAATTGAGGAAAGTGCAATTTTGTTGGGTAGATGTTGGATTGTTAAATATCTTTGTAAGATAGATCGTTGAAGCGATTTGttgaaaagtatatatatataaatatatatatttttcttcctAGTCCGTTCACACCTCCAGGACTCTAAAATATCggggtacaaaaaaaaa
>TCONS_00041369
GCTGAAGCGTCGCGCGCACTTCGCAGAGTTGGAAATGTGAAAGCAAGAAGCAAGGCTTTATTTTCCCTCTCTCCCTTcttctctgtctctctttttttctcttttcatacacacacatatacatacacaccccatacattcacacatacacacaccctcacccacacgcacactcacgcgcgcacacacaacatATACATCGCCAATTCAAGAGTTAAAACCGACAGATATGTATTCTCCGCTATGCCTAAcacagGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGAAGAGGAGCGAGCCGTGAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCCGAGTTCCGCGAGGATTTTGTGCTCACCGTCACCGGGAAGAAGCCCCCTTGCTGTGTTCTCTCGAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCTCTTGAAAGTACTGACGGCGAAAGGCTGGTTAAGTCACCGCAGTGCTCGAACCCAGGGCTGTGCGTGCAGCCGCATCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTCGTCCATGCAGAAGCAGGGCAGTCTGACAGTCCGAACCAGCCCAGTGAAGGCGACATCAAGGACCAGCCAGAAAATGGGCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTAGTGCGAGTCTCACAGACGCCCATCGCGGCAGGGACGGGGCCCAACTTTTCGTTGGCAGACTTGGACAGCTCTTCCTACTACAGTATGAGCCCTGGGGCCATGAGGCGCCCCCTACCCAGCACTTCTTCTAGCAgTTCTGCAAAGCGAATCAAATGCATGGAGGATGAGGTGGACAGCCCGGGAGAGGAGTCCTACTACCCAGGTCAGGGACGCTCGCCTGGAAGCGGCAGCCAAGCCAGCAGCTGGCATGAAGTGGAGCCAGCTGGATATAAACTGCGTGGCTCGCTAGCTAGTTCGTTCATCTCAAGACAAGCGAGTCCACACGCCACGCCGTCAAGTCTTCATTTCCCGACGTCGCCAATCATCCAGCAGCCCGGCTCCTACTTCTCCCACCACGCCATTCGCTACCACCCACAGGAGACGCTAAAGGAGTTTGTCCAACTTGTCTGTCCTGACAGTGGTCAGCAGGCTGGACAGGTGGGCTTCCTTAATCCCAATGGGAGCAGTCAAGGGAAGGTGCACAACCCGTTCCTGCCCACCCCGATGCTGCCGCCCCCTCCACCGCCCCCGATGGCGCGACCCGTTCCTCTGCCCGTGCCAGACTCTAAACCTCCATCCACCTCCACTGACGGAGGAGGAAACTCACCCACTTCACCCACCTACTCCACACCGAGCACGTCTCCCGCTCAGCGTTTTGTCAGCGTGGGCCCCAGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCTCAGTGGTACCTGGGCTAAAGACTCCCGAACACGGACACACGGCCGCTCCGAGGTCACTCGACCACCCCCTCTGTCTCCCCTGAGTACGACCCGCAAACATGTACACCAGTCTGAACAGAGAGAAGCCACTTGCTGCCCCGTACCGGACAGACCCACAGCATGGCTCCAGCCGAACAACCCCGCCAAGCCCTGGAACAAGAGGAACCGCTTACACCCACTTACTATATATCTATATAGTCCAGATGTATTCTTCCATATGTATGGTTTACATGCCTATATTCATATATAGTAGCTGTCCAGCTCTTCTGAGGGTGGagctcagataaaaaaaaaaaacgaagagcttttttttgttttcctaattttttttttttgttttgaaaacgtgcacgttttatttttattttctgttcgtttgtttgtttttgttttttatggttCACCCTCACAGATAGACGAGGAAAAACGTAACATGACGCAATCAAAGAGCTTCCCGCTTCTGTGCCTGTGGTGTTAAAAAGAGAGGCGTTTCGAGATCAAAAACGCAGTCGACGGCCAAGGGTCGCGAACCCACAACCATCTGGAGGTCGGAGCTCTGCCTTTCAATCACTCGTGTTTCGACGCTGTTGGAGGTTTCGCCTGGGTCAGATTTACCACCAGCTAAAAAACAAACTAATCTAAACAAATGTGTATTGCGTCTTCTGGACCATTTGCTTCCCTTCCACCGCCATCATCACCACCACCGCCATCAAGGACTCAACCCCATTTTTatctgttgtttttgtcatttttggggCAGGCGATGAAGAAGTCATGAACGGTGATGTTTGATATCAGGTCATTTTACAGGAGATCTCCCCACTTGGAGGCATgttcatattttgtgtttttcttacaaaaaaaatgaggaaaaaaaagagagaaagtcaTAGTGATTGTTTCTACTAAACCCCAGCCGGAAGGTCTGTGGCACGCCAAGGGCCGAGTGAAGGTTCAATCTTCCAGAAACTTCAAGGGAAGGTTAACCGTGAATACTGAATTGAGGAAAGTGCAATTTTGTTGGGTAGATGTTGGATTGTTAAATATCTTTGTAAGATAGATCGTTGAAGCGATTTGttgaaaagtatatatatataaatatatatatttttcttcctAGTCCGTTCACACCTCCAGGACTCTAAAATATCggggt
>TCONS_00041370
ATGTATTCTCCGCTATGCCTAAcacagGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGAAGAGGAGCGAGCCGTGAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCCGAGTTCCGCGAGGATTTTGTGCTCACCGTCACCGGGAAGAAGCCCCCTTGCTGTGTTCTCTCGAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCTCTTGAAAGTACTGACGGCGAAAGGCTGGTTAAGTCACCGCAGTGCTCGAACCCAGGGCTGTGCGTGCAGCCGCATCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTCGTCCATGCAGAAGCAGGGCAGTCTGACAGTCCGAACCAGCCCAGTGAAGGCGACATCAAGGACCAGCCAGAAAATGGGCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTAGTGCGAGTCTCACAGACGCCCATCGCGGCAGGGACGGGGCCCAACTTTTCGTTGGCAGACTTGGACAGCTCTTCCTACTACAGTATGAGCCCTGGGGCCATGAGGCGCCCCCTACCCAGCACTTCTTCTAGCAgTTCTGCAAAGCGAATCAAATGCATGGAGGATGAGGTGGACAGCCCGGGAGAGGAGTCCTACTACCCAGGTCAGGGACGCTCGCCTGGAAGCGGCAGCCAAGCCAGCAGCTGGCATGAAGTGGAGCCAGCGAGTCCACACGCCACGCCGTCAAGTCTTCATTTCCCGACGTCGCCAATCATCCAGCAGCCCGGCTCCTACTTCTCCCACCACGCCATTCGCTACCACCCACAGGAGACGCTAAAGGAGTTTGTCCAACTTGTCTGTCCTGACAGTGGTCAGCAGGCTGGACAGGTGGGCTTCCTTAATCCCAATGGGAGCAGTCAAGGGAAGGTGCACAACCCGTTCCTGCCCACCCCGATGCTGCCGCCCCCTCCACCGCCCCCGATGGCGCGACCCGTTCCTCTGCCCGTGCCAGACTCTAAACCTCCATCCACCTCCACTGACGGAGGAGGAAACTCACCCACTTCACCCACCTACTCCACACCGAGCACGTCTCCCGCTCAGCGTTTTGTCAGCGTGGGCCCCAGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCTCAGTGGTACCTGGGCTAA
>TCONS_00041371
CGGTGAGTGCACTAGCATCAGATGAAGCTTGCTGACAGCGTAATGGCAGCTAAAACCTCGGAAGGCTCCATCAAATGGCAGCTCTGCTACGACATCTCGGCCAGGACTTGGTGGATGGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGAAGAGGAGCGAGCCGTGAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCCGAGTTCCGCGAGGATTTTGTGCTCACCGTCACCGGGAAGAAGCCCCCTTGCTGTGTTCTCTCGAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCTCTTGAAAGTACTGACGGCGAAAGGCTGGTTAAGTCACCGCAGTGCTCGAACCCAGGGCTGTGCGTGCAGCCGCATCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTCGTCCATGCAGAAGCAGGGCAGTCTGACAGTCCGAACCAGCCCAGTGAAGGCGACATCAAGGACCAGCCAGAAAATGGGCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTAGTGCGAGTCTC

Function

symbol description
nfia Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Human ortholog(s) of this gene implicated in NFIA-related disorder. Orthologous to human NFIA (nuclear factor I A).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-050208-501 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Human ortholog(s) of this gene implicated in NFIA-related disorder. Orthologous to human NFIA (nuclear factor I A).

Ensembl:

ensembl_id ENSDARG00000062420

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041368 False 3353 mRNA 0.51 11 16839467 16997887
TCONS_00041369 False 2852 mRNA 0.51 11 16839478 16997475
TCONS_00041370 False 1395 mRNA 0.58 10 16840655 16997246
TCONS_00041371 True 782 mRNA 0.55 4 16899672 17052381

Neighbor

gene id symbol gene type direction distance location
XLOC_021049 NA coding downstream 11354 16810238 ~ 16828113 (-)
XLOC_021047 patj coding downstream 80316 16569123 ~ 16759151 (-)
XLOC_021048 si:dkey-38n4.2 coding downstream 180471 16657317 ~ 16658996 (-)
XLOC_021046 stx6 coding downstream 345061 16482631 ~ 16494406 (-)
XLOC_021045 NA coding downstream 373728 16463593 ~ 16465739 (-)
XLOC_021052 NA coding upstream 822 17053203 ~ 17064683 (-)
XLOC_021053 nphs2 coding upstream 198894 17251275 ~ 17256573 (-)
XLOC_021054 BX649327.1 coding upstream 373297 17425678 ~ 17425796 (-)
XLOC_021055 NA coding upstream 400044 17452425 ~ 17454463 (-)
XLOC_021056 si:ch211-197g15.10 coding upstream 403330 17455711 ~ 17459587 (-)
XLOC_021036 NA non-coding downstream 674265 16163930 ~ 16165202 (-)
XLOC_021032 NA non-coding downstream 808828 16028078 ~ 16030639 (-)
XLOC_021031 NA non-coding downstream 817552 16016082 ~ 16021915 (-)
XLOC_021067 NA non-coding upstream 766442 17818823 ~ 17821448 (-)
XLOC_021073 NA non-coding upstream 1290931 18343312 ~ 18345189 (-)

Expression


Co-expression Network