XLOC_021073


Basic Information

Item Value
gene id XLOC_021073
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18343312 ~ 18345189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042383
ATGGCATCAGATCTATGTGCATCTGCAAGAACACTTTTTCATCACTTTCATATCTCCGAAGCTTCAAAAAGACCACAGCGTGACGCAAAACAGGAagcttaatattttaataacccTAAACATATTGCGGAGGATTATTTATACACGAGTGTTTGGGTTTCACTAATCAGATCATGACGTCATTTAAACCTCATGTCACATATAAAAGGCTGcgcgtttgtttgtttgctactAATTCTGCTGTGAAATCTTGCATTCGATGAAGCGCTTACAGCACGATGGCGATGTATTGGATTGTCTGGGCTGGTGAAAAACATGTCTGTTCTTGCCATGGTGCGGTGACTATCCTCGCGGGGCTTTCTGAAGAAGAGTCGTCTGATGTAATGACCGCCCTGAGGGTGCAGACCGAGCAAGACAATAGGAGGCATCGCTGGCGCTATACAACACAGCATGGTGGCAATACAACCCAAACTGGATCGGTACATTCAGCTGTCCAACAATACGGGCGACCCGCTGGCCCGAAAGAATTGGGGTGGTCACCTGACCAGCTGCAAACTCACACTTTCAGTTTTCTGTCATCAATGCTACTTGTGGACTTTTCCAAGGTGTCGAAtgtttttgtgagttttttttttataaatggttgaaaaattattttaacttaaatatttaaaaataaccagAGAGagaattaatatgaattatatgAAATTAGAAACAAACCTGGCATTAAGGTTATAGCATTAACTTCTACAAAAAATAAGCTTTGAAATAAGTATTTATGAAAAAGTTCCCAGTTTAATTTCaacaaatacatgttttttttttaaacattattggtaataattttgttgtttattatggtttgaatataaaatatataggctACACACACTCGTGATTGATATCAAATTTATATTGATTTACAATACTACATATTAGCATATTGTACAAAGATTATATATGAAAAAATGGAATGTTTGCATTAAGATATTTTTAACGATGATCTTTAACTCTAAACCCAAAGGATTCTTGATACACTATGTATATCATTAATGCTAAAACTGATCGCGATGCCAGCTCGGCATCAtgatgtctattggccatcagcgATAGACAATGGTATCGTCTATTGATACAACTCTAGTACATACGATCACAACGAATAGGGGATAAAGCAGAAGACATCAGTGTGCAAACCAAAGCAAAGGCTGGTTCAGCATGACTAGTGTATTCGGCACTGAACTCAATTGTTTTAGAAGTGGaattttttgtatgttattattgAAATAGGTtcgttaaaataatatacatttttgataaatgctaatgcattattaaatacgCTTAAAgcaatttttatattcattttttaaattttatggaAGAAATTgtaaaattacccatggcaacttaaTGTAATGCATTTTGTGATGTTTACTTtcagcccacagctctcaatcaagcttggattttggcccttctTCAGAAAAAGTGTGGGCACCCCTGCTATACATCATTAGAAAGCTCATGGATTCAATATTTGCACAATGTTCTACAAGTTATATTTTGCTGTGAGAGAAATGTTCTAATCACAAATATTTGCAGCAAAACATAAATAAGATCTATAAGTAAACAAAGTCGTCCTTTACTATAAAATCAGTACACTCTGACAAGCAAACTTTGTTTTTAGGCTATATATTTAAACACTTTtagaatattttcttttaaagatctgtatttatatatttagatgTTAGCTTTAAGGTCTaaagtctacattgtaaaagcgctatagacgtaaagattaattgaatatcTATAAGCTAGAGTGCTCCAGAACAGTGAAAAAATTggtattaaaaaacataaaactga

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042383 True 1878 lncRNA 0.34 1 18343312 18345189

Neighbor

gene id symbol gene type direction distance location
XLOC_021072 tmem161a coding downstream 101922 18230864 ~ 18241390 (-)
XLOC_021071 si:ch211-125m10.6 coding downstream 164098 18174125 ~ 18179214 (-)
XLOC_021070 rfxank coding downstream 178477 18160330 ~ 18164835 (-)
XLOC_021069 ncanb coding downstream 226677 17864872 ~ 18116635 (-)
XLOC_021068 BX908731.1 coding downstream 499195 17838913 ~ 17844117 (-)
XLOC_021074 NA coding upstream 2889 18348078 ~ 18349774 (-)
XLOC_021075 tssk6 coding upstream 41064 18386253 ~ 18387059 (-)
XLOC_021076 si:ch211-212d10.2 coding upstream 143512 18488701 ~ 18491813 (-)
XLOC_021077 NA coding upstream 196816 18542005 ~ 18546649 (-)
XLOC_021078 NA coding upstream 246510 18591699 ~ 18659957 (-)
XLOC_021067 NA non-coding downstream 521864 17818823 ~ 17821448 (-)
XLOC_021055 NA non-coding downstream 888849 17452425 ~ 17454463 (-)
XLOC_021054 BX649327.1 non-coding downstream 917516 17425678 ~ 17425796 (-)
XLOC_021052 NA non-coding downstream 1278629 17053203 ~ 17064683 (-)
XLOC_021051 NA non-coding downstream 1333812 17004310 ~ 17009500 (-)
XLOC_021079 BX649276.1 non-coding upstream 317910 18663099 ~ 18718920 (-)
XLOC_021082 NA non-coding upstream 478001 18823190 ~ 18832046 (-)

Expression


Co-expression Network