XLOC_021077


Basic Information

Item Value
gene id XLOC_021077
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18542005 ~ 18546649 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041954
CGCCCTCATTGATCCGCAGTGACGTGAAGCCTTTAAACGGGCGCCATTTTCTGTGCTCTTTCTCATTCTGCCGCAGTCGGCGACGCGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGgCTGACTTTCTGGATGTTGCATTTGAAAACTAGATGAGAGCGTTAACCTCTGTGATGAAGTGAAGTCGTCATCAGCTGTTAATAAAAGAGgGCTATTGGAAATGCCTTCTATGTGGATGAATCCATCCTTCTCAAAAGGAAGCATTGAAGCGCTTCACTGTTCAGTCAACATGAAGTTTAGATGTTTGCTATTTTTCAGAGAGGTCGTTTTTGTAGTGCGAGTGAAAGTCATTTAATAAAGTCTGGTTACATTGAGTA
>TCONS_00041418
GTGCTCTTTCTCATTCTGCCGCAGTCGGCGACGCGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGATTTTAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGaagaccttttttattttttacttttttgctttacgTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTTTTACCCGTCAAGTATCTGCAGGATGTTCCTCGATGAGGAGCTGCATAAAATCAATGAGCATTCAGTTACTGTAAGAGTTTCAAGCCTGGTGAGGCTACCTGTATCTGATATTTTACCTTGGGAATTGTTATAGATGCTCACAGGGGTTTGAaattcttgtttcttttttttagtatGTGTTTAAGAAACTGTGTCTCTGAAACCATGCGTGAAAACTGACCTGTCCAACACAGCCTGATAGCTTCTAAGACCAATTTCCTCAAAGATCTTTGGACCAATTTCTCACTGGCTCACTGAAAGTGCTAGGGgccttttgcatttaaaatgaattttaaaagcgGCAGCTTCGCCACCTGAAAAATATTCTAATCCGATCCTCTAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATGGCTCTTCGCCACCTCCATGTTGTGATGCATTCCTTTAGTGAAGCAAGGCAGGCATGTTGCATTGGAGTTGTCTCCGGCAAACCTCCTTGATGTTGCTAAAGATTTGTAAATACTCATTCAAAGAGTAAACCACTTGGGTTGGGTCATTAAACCTCATGTTAGGACTGATGACCCAAGGTACTTTACTCTTTGCACAgtctaaatttatttttaaactatgcTCTGCTGTGGACTGAACGTATCCTCTTAAATGTCAATTTTGTGCTGTTCTGTATCAAAACCTCAGAATCCTTTTCTTTTTGTATTAAATTGGCTTCATGAAGCCCATTAAAAAGTGGTTGGAAAACGCTCTGATTTCTTTTGCCTCCGATATTTAAAACTAATCCTTGCTAGTCAGTTTAATGTATTGGATTGATTAGTGGGGAACTTAGCATCTGGGATCTTAAACATTTTATCCAAGCAAATAAAACTCAGTTCTAGCTCAGTAAACCAATTTAAAGATGAAACGTTGCTGTTATGATATAGCACCCAATGGTTCTGTATAATGCTTCATTGGATCCAAGAGTTCTCTGCTAGAAATTTTGGAAATCCTCAATGTCCTTGGAGAATGAAGTGTTGTGCCTTCCGACTCAAGAATCCTGATGAAAGCTGCTCTCATGGCTAGGTCAATTGTGGAGATAGGCCTGTAATGTGAGGTAAAACCTTTTGCTCTCCTGTACGCATCCTACAACAGTTCTCATTGTCCATGTTTTCTTCGACTATTGCCTCAACAAGTGACTTATCTTCAGAATGTTCAATCCTGTTCCAcaacttcctgttttttttttttttttttttttaaatgagaaagctgcatgatttttatttttaaagtgtgctCCTTTTTTGGCAAAGTACCTCATGCGGCCTTTGAAATGAGAGATAAAGTCCCTGTTCtgattgcattttttttgtctGCACCCATTATAAACCATGTATTTTTTTCACTAGTCACAGATTTGACAATTTTTGAAGAGATCTAGCCTTTGCGTCACCTCATCGTCTTTTGAGTGATTCACTATGGAGTCTCTAAAAAGTAGTCTGGCCCCATGTTCTCAATTTAGTTATGATTTTAAAATGGAAATGTTTGTCTTAATTGCATGATTGAGAGCATTCATGTATATTTTgtagtaaaatataaattttatttttcaggCTGACTTTCTGGATGTTGCATTTGAAAACTAGATGAGAGCGTTAACCTCTGTGATGAAGTGAAGTCGTCATCAGCTGTTAATAAAAGAGGTATGTATTTAGTGTAGTCTTTATGAAACTTATGGCCAATGTGGTACtaaatagtgtttgtttttttttgtttttttctcaggGCTATTGGAAATGCCTTCTATGTGGATGAATCCATCCTTCTCAAAAGGAAGCATTGAAGCGCTTCACTGTTCAGTCAACATGAAGTTTAGATGTTTGCTATTTTTCAGAGAGGTCGTTTTTGTAGTGCGAGTGAAAGTCATTTAATAAAGTCTGGTTACATT
>TCONS_00041419
CGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGAATAATGTCAAGATGAAAGCCAAACTGCCATATTTGAACTTTTGAGATCAGTCTACTTGGTTGCCCTTACCTTGGAGTTGCTGACCACAATCCAAAAAGTCATTTTTCAGTTTTAACCACTAAAGTCGGTTTTGTGCACTTGATCAATAGTCAATAAGTCCTTGTACGAAAAAGAATCATGTCTTGGTATCAGTTCTGTTTGGAAAGGATGTTCTCAATGCTCCAGTGCCTTTACACTCTTGCCTACTTCTTGTCCTCAGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGaagaccttttttattttttacttttttgctttacgTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTTTTACCCGTCAAGTATCTGCAGGATGTTCCTCGATGAGGAGCTGCATAAAATCAATGAGCATTCAGTTACTGTAAGAGTTTCAAGCCTGGTGAGGCTACCTGTATCTGATATTTTACCTTGGGAATTGTTATAGATGCTCACAGGGGTTTGAaattcttgtttcttttttttagtatGTGTTTAAGAAACTGTGTCTCTGAAACCATGCGTGAAAACTGACCTGTCCAACACAGCCTGATAGCTTCTAAGACCAATTTCCTCAAAGATCTTTGGACCAATTTCTCACTGGCTCACTGAAAGTGCTAGGGgccttttgcatttaaaatgaattttaaaagcgGCAGCTTCGCCACCTGAAAAATATTCTAATCCGATCCTCTAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATGGCTCTTCGCCACCTCCATGTTGTGATGCATTCCTTTAGTGAAGCAAGGCAGGCATGTTGCATTGGAGTTGTCTCCGGCAAACCTCCTTGATGTTGCTAAAGATTTGTAAATACTCATTCAAAGAGTAAACCACTTGGGTTGGGTCATTAAACCTCATGTTAGGACTGATGACCCAAGGTACTTTACTCTTTGCACAgtctaaatttatttttaaactatgcTCTGCTGTGGACTGAACGTATCCTCTTAAATGTCAATTTTGTGCTGTTCTGTATCAAAACCTCAGAATCCTTTTCTTTTTGTATTAAATTGGCTTCATGAAGCCCATTAAAAAGTGGTTGGAAAA
>TCONS_00041420
ACGCGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGaagaccttttttattttttacttttttgctttacgTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTTTTACCCGTCAAGTATCTGCAGGATGTTCCTCGATGAGGAGCTGCATAAAATCAATGAGCATTCAGTTACTGTAAGAGTTTCAAGCCTGGTGAGGCTACCTGTATCTGATATTTTACCTTGGGAATTGTTATAGATGCTCACAGGGGTTTGAaattcttgtttcttttttttagtatGTGTTTAAGAAACTGTGTCTCTGAAACCATGCGTGAAAACTGACCTGTCCAACACAGCCTGATAGCTTCTAAGACCAATTTCCTCAAAGATCTTTGGACCAATTTCTCACTGGCTCACTGAAAGTGCTAGGGgccttttgcatttaaaatgaattttaaaagcgGCAGCTTCGCCACCTGAAAAATATTCTAATCCGATCCTCTAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATGGCTCTTCGCCACCTCCATGTTGTGATGCATTCCTTTAGTGAAGCAAGGCAGGCATGTTGCATTGGAGTTGTCTCCGGCAAACCTCCTTGATGTTGCTAAAGATTTGTAAATACTCATTCAAAGAGTAAACCACTTGGGTTGGGTCATTAAACCTCATGTTAGGACTGATGACCCAAGGTACTTTACTCTTTGCACAgtctaaatttatttttaaactatgcTCTGCTGTGGACTGAACGTATCCTCTTAAATGTCAATTTTGTGCTGTTCTGTATCAAAACCTCAGAATCCTTTTCTTTTTGTATTAAATTGGCTTCATGAAGCCCATTAAAAAGTGGTTGGAAAA
>TCONS_00041421
GGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGGTACGTattgatttataattattaaacctTATTAGTCAACTGCACCAACCTGCACTATAAATCTGTCCATTTTTGCCTTTAGAATAATGTCAAGATGAAAGCCAAACTGCCATATTTGAACTTTTGAGATCAGTCTACTTGGTTGCCCTTACCTTGGAGTTGCTGACCACAATCCAAAAAGTCATTTTTCAGTTTTAACCACTAAAGTCGGTTTTGTGCACTTGATCAATAGTCAATAAGTCCTTGTACGAAAAAGAATCATGTCTTGGTATCAGTTCTGTTTGGAAAGGATGTTCTCAATGCTCCAGTGCCTTTACACTCTTGCCTACTTCTTGTCCTCAGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTGTATTTAAAAAGATGCGCTCTTCGaagaccttttttattttttacttttttgctttacgTTGTGTTCCAGTTGAAATGTTCTATTAAAGACAGTCCCCTTTTT
>TCONS_00041955
CGCCCTCATTGATCCGCAGTGACGTGAAGCCTTTAAACGGGCGCCATTTTCTGTGCTCTTTCTCATTCTGCCGCAGTCGGCGACGCGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGATTTTAGGAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAGACGGTTACGACAGTTACGAATAATGTCAAGATGAAAGCCAAACTGCCATATTTGAACTTTTGAGATCAGTCTACTTGGTTGCCCTTACCTTGGAGTTGCTGACCACAATCCAAAAAGTCATTTTTCAGTTTTAACCACTAAAGTCGGTTTTGTGCACTTGATCAATAGTCAATAAGTCCTTGTACGAAAAAGAATCATGTCTTGGTATCAGTTCTGTTTGGAAAGGATGTTCTCAATGCTCCAGTGCCTTTACACTCTTGCCTACTTCTTGTCCTCAGCTTCACACGAGTAAAAAAACCCCGATTGCAAGATCATCCCTACGCTGGCTG
>TCONS_00041422
aaattttttttaaaggattttatGAAAAATGGTACTTTCGTCCCTGCTCTCCACTATTTCATTGGTAAACTGGAAGATGAGTTTATGTCTTCTGATTATTCTGATAACaacatggtttatttatttatttctgtcaaTAATATAAGTGCAGTAACTTGGTCGTTATTTACCCTATCCACTGGTAACTGTAAATTCATGACCGTAAATATTACACACACCATTCATATGCGACAAAAAGCAATATGTTTCCGCGTGAGAGCATTATAACCGTAACAAAGGGATCTTTATTCATGTAAAGCCTGTGACGCGACGCGAAGTGAACCCGCCCTCATTGATCCGCAGTGACGTGAAGCCTTTAAACGGGCGCCATTTTCTGTGCTCTTTCTCATTCTGCCGCAGTCGGCGACGCGCTGTACAACCGtcctgtgtgttcaacagaaactctgAGgttatcATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAGttgaTGTTATCAGAGACCGTGAAACTGACCGTTCTAGAGGCTTTGGCTTTGTGACCTTTGAAAATCCAGAAGATGCTAAGGATGCCATGGCTGCCATGAATGGAAAGCAAGTTGATGGTCGCATGATTCGCGTTGATGAAGCTGGCAAATCTGGTGGACGGTCTGGTGGTTTCAGAGGGGGTTCCAGAGGTGGTGGCAGAGGCTTCTTCAGAGGCAGCAGAGGAAGAGGTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAGATTTTAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-5841 Predicted to enable RNA binding activity. Acts upstream of or within response to cold. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of spliceosomal complex. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human CIRBP (cold inducible RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000013351

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041954 False 999 lncRNA 0.49 8 18542005 18546326
TCONS_00041418 False 2794 processed_transcript 0.41 7 18542010 18546274
TCONS_00041419 False 1831 mRNA 0.44 7 18543193 18546241
TCONS_00041420 False 1574 mRNA 0.45 7 18543193 18546244
TCONS_00041421 False 643 mRNA 0.42 2 18543955 18544701
TCONS_00041955 False 1059 lncRNA 0.49 7 18544057 18546326
TCONS_00041422 True 1012 mRNA 0.47 6 18544509 18546649

Neighbor

gene id symbol gene type direction distance location
XLOC_021076 si:ch211-212d10.2 coding downstream 50192 18488701 ~ 18491813 (-)
XLOC_021075 tssk6 coding downstream 154946 18386253 ~ 18387059 (-)
XLOC_021074 NA coding downstream 192231 18348078 ~ 18349774 (-)
XLOC_021073 NA coding downstream 196816 18343312 ~ 18345189 (-)
XLOC_021072 tmem161a coding downstream 300615 18230864 ~ 18241390 (-)
XLOC_021078 NA coding upstream 45050 18591699 ~ 18659957 (-)
XLOC_021079 BX649276.1 coding upstream 116450 18663099 ~ 18718920 (-)
XLOC_021080 midn coding upstream 178452 18725101 ~ 18749313 (-)
XLOC_021081 atp5f1d coding upstream 219412 18766061 ~ 18779232 (-)
XLOC_021082 NA coding upstream 276541 18823190 ~ 18832046 (-)
XLOC_021067 NA non-coding downstream 720557 17818823 ~ 17821448 (-)
XLOC_021055 NA non-coding downstream 1087542 17452425 ~ 17454463 (-)
XLOC_021054 BX649327.1 non-coding downstream 1116209 17425678 ~ 17425796 (-)
XLOC_021083 NA non-coding upstream 395867 18942516 ~ 18946594 (-)
XLOC_021084 NA non-coding upstream 447190 18993839 ~ 18998174 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_02690496_02691051 NA coding CI01000030 null 2690496 ~ 2691487 (-)