XLOC_021080 (midn)


Basic Information

Item Value
gene id XLOC_021080
gene name midn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18725101 ~ 18749313 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041425
CAGATATAaagaaatatacatatataaagaaAAGAAGGAAAGATCGCGCTGGTTTTTGCAGTACACTGTCAACGACAAAGGACTACACTTGCAGAATATGCATTTGAATGCACTATCGGAAAAAtagaattaaaaactgctgtaTTTGAAGATATTAATTCGGGGGATCGCCGCAGGATCCATCACCAAACGGGAATAATCATTGGGAATATTTTTCCAATAGCTTTCCATTGAGACACCCAGCCCTATCCGCCCGCTTCCATCGACCCTGTCTCCTCTATCGTAGGCTATCGAATGGACCAGCATCCGAGCGCCCGGAGCTGCAGCAGTCGCGGAGCTGCGCCGTCCTGCGAGAGCGTCTCCGGCGAGCCCCCCATGAATTTGTACATCCACTCCACCACCGGCACACGCTTCGAGCTCTCCCTTCCCGCAGAAGAGACCGTGGAAGGGCTAAAGCGAAGACTCTCTCAAAGACTGAAAGTACCCAAAGAAAGACTCGCTCTGCTACACAAAGAAACACGCCTGAGTTCAGGAAAACTTCAAGATTTGGGAATAACGGATGGGAGCAAGTTAACACTGGTTCCAACAGTTGAAGCCGGcctaatgTCTCAAGCATCAAGACCTGAGCAGTCAGTAATGCAGGCCCTGGAGAGTTTGACAGAAACACAGGTCAGTGACTTCCTGTCTGGCCGGTCTCCTTTAACCCTGGCTCTGCGAGTAGGCGATCATATGATGTTTGTCCAACTGCAGTTGGCAGCACAGCCCTCAGGCGGCCCACAGTTACAGCATCGGCATCTCATATCTCGTGGGAGTTCAGAGGGCACAACAGGACTGTCTCACGGAGCTTCAGGCTCTGCCTCTGGGATGGCAAGGGTTTCACACAACCCCCACCCACATCACCCACACCAACATCCTCACCATCCAAACACAACGCTTCCATCTAATCCAGCAGCCTTCCCACCTTCCCCCTCTATCCCATCCATTCCTCCCATGTACTCCACCTCAGCCTCAGGGCATTGTAGCCCTCCACCACAACCCTCTCAACTCCCTGGAAGTTTTCTTCACTCTCAACAGCCGTCTTCGGCCTGCGCCCCTTCTCCAAGCAGCCCCAGCCCCGCAGCTTCCTGTCCAGAGGCCAGTTGCTCAGCAAAGACTTCCGGCAACTGTAATACTCCCTTGCGATCTCGCAAACCTGGCGCTATCATCGAAAGTTTTGTGAATCATGCCCCTGGAGTCTTCTCTGGGACATTTTCTGGCACTTTGCATCCCAACTGTCAGGACAGCACCGGACGTCCCAGACGGGATATAGGCACCATCCTTCAAATTTTGAATGACCTTTTGAGTGCCACCCGACATTATCAAGGCATGCCCCCATCGCTTACACAGCTTCGCTATCAGACCCAGTGCACCAGCCCCAACTCACCAGCACCATCACCACCACCCTCACCTCCCCACACCACTGGACTAACAGGCCTGCCTACCACAGTGCCCTCAGAGACCCAACCAACTCTTCACCCACTTGTGCAGTGCCAAAGCCAGATCCGAATGTGCAAACCTCCCGGTGACCGACTCCGTCAGACGGAGAACCGAGCCACACGCTGCAAGGTGGAGCGACTACAGCTGCTCATGCAGCAGAAGCGCCTGCGTAGGAAGGCTCGGCGAGACTCTCGTGCCCCATACCACTGGCTCCCCAACCGCAAGGCCGGGCGCAGCAACAGTAATAGCAGTATGTCAAGCGAAGGCTCCCTGGACCTGGACTTTGAGGACTCTGTGTGGAAGCCAGACGTCAAAGCTGACATGAAATCAGAGTTCATCATGGCCTGAAGGTGGTCGCGCCATCTTCATCGAGGAAGATTGGGGTTTACACTTTAGAGGGGTAAATTTCCGAAGAACTGTATCCACAGACGCACATTCAGAATCTCCAAGGCTTCACTCCGCGTTTATCCTGTGACCACAGAGACTATACATAAAGGAAGATTCACAGACTACTTTACTCACCTACATCCTTGATAGACTATGATCTTGGAATAGACTGAATTTTCAAATGATCTTTGGATATGGATTTGAACTGATGAATTGACAGATTCTGAACATCCAAGAAGTAAACACAAGTGAGCATAGCAGACGTCATCGGTGTTGGGATTTGTTTTTCTCTTTCCTTTGGTTTCTTTACTTTCCCATAGGGAAGATCTATACAGGCACGACGAACTGACAAACTTCAGATACTGATCctacttcctctttttttttttttttttgcgttacaAATGGGCATTCAGAGTTCAAGAATCATTTGAAGGGGGttatctttgttttttaaatcctGTTTTTCTTGAATCATGATGATTTCTGAAACAAAATATGTAGCATTACCCACAAAGCATTCAGGTTTTTTATCTTGTAGAAGAGGAGGAttcatttgcacacacacacacatacacacacctgtgATTTGAAATACAAAATGATATCATAACCAAGAGATGGCACAGTGCATGtttaatatatgaatatttaaaaaatgctttctcAACAGCTCAGTGTAGAGTCAGAGGTTCAAGTAGGAAACTAAGACATGAAATGACACAAAAATATGCTGATGTGATCGAAGACACGAGGCTTGTGAAGTCGGTTGTTTTTTAGTACGCAGAATGaacggcttttcttttttttaacgccacaaaaacaaacaaaccaaccaaccaaacgtTAAACAGCAGTTGCTCAGCAAGGCTCGAGTCAAGCTGTGAAATGAATCTGATGTTATATAATCGTTTAAAAACACACTGTATCTCTCCTGTTACTGTCTAAATGTGTATAATAAGAGAGAGTGGTGGGGTGCCAGAGGAATagtttacaaatgtgcattataATGGCTCGCTCTGCCAAAGTGGAATCTCTCATTTATGCATTCGactcaaaagaaagaaaaaaaaaaagggtgttTTTCCCACAGACGCTTTTAAATTGTGTCCGTTCCGACTTCTTTCCCACGTAAACATCCAGAATGGAGCACATCTCCAAGCTTCACACTCTCGATAGTGCCTCATATGTAGACGCACTGACATATTCAATCAGGCGTTCCACAGACAGACGGTTCTGCTGCTATATGGGACTTCTCTTTGCATGCAAACGTGTGAATTATCCTGATCCTTTTTTTTgtagagaataataataatatcaacaacaataCTGAGAAACTGGTGCTGAACGAAAAGATATAAAAGCATGAATTTGTGACGAAAAaacgaattaaaaaaaatacaaacattttccCCAGCAACTTGGGATTTTTGAATTAGGAACAGGATGTTACATATCAGTCGCAAACCAAAACGGGACTGGAATTCTACTGTACATGGATCATTCCTGGACTAACTAAGGAACAATGGAACATTTTCTACTCCTGACATCCGAGGGAGCAACGTTTCCATCGACCTGCTCAGATGCGGACTAACAGGGATGTTGGCATCCACCGTTCACCCCTAATGACTGCTTGGAAGTAAACGTGAAAATGTCCGAAACCACATCGATGTTGCACTCGCGGAGTTTGCAATGAGATTACCTACCTGAAGGGGAACAttgtcttttcctttttttttctgttcaagtGGCCTTAACGTTGATTATCAAAACACTTGCAGAGTGGTGGACAACATAGGGATGTTTctgttgatttattttgtttttttgtcctgTGGTTTTGTTAAATCATCACATTTTCAGGGGCGGTTTTTGTGTTTAGGAGGTGGAGGCTCTATTATCTCAAGGCTTCAGTGCCTTAAAGTTTTGCCCCTTCGGTGTgtacgaaaaaaaaaactgaacaaattatTCGCGTTTATGCAGGTTTTTATCAATTTCTAGAAGCTCTGGTAAAATATTGTCTGTTTTATGGTTTGATTGTTACAAGTCGTGACCTGGAGGTCAAACAGGTTCCATCAGTGTGTTCCGTTGTTTGTTTGATTACGTCCCTTGAACCCTGTCCTACAAAGAAGCAacaaatttacaaattgaattgaaaaatagAAGTTTAAGCTGCAGTGCTATAACGACAAAGTGCCCTAAACTCTCTCAATTGAGACGTCCTTTAAGGACACGTTGACAACATGCACTTCCCTTCTTTCTCAGATAAAGGACTTCAATGGACTTTCTCCCTTTTTTCCCAAgaaaatcattatttaatttttatatatgtatgaaATATACTCTGTGTGTGCCTCACCTATATGTaaaacggtaaaaaaaaaaaaagtgaaaactgaaaaaaagcataGGAGATGATCTGAGTTTTAGGATGGGGTAATTGATGAGGGTGGAGGGTGGGAACGGGGGGCATTTTCAATAGTTTGTTGGAGTTCTGATCACATCATTTAAGTTGCCTGTTCTTTCTTGTAGCCAATGAAAACTGATTACAAGAgtcgagaaaaaaaaacaatttacaatgTTCTAGCTATAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAAATGGTAACTGTGAATTATGTATTtctttgtgctttttttaaagtGGGCGAAAGGTGGAAAAAAAGGGTGTTGCTGTaccctgttttgtttttgtggaatATAATGGaaataatcaagtaaaaa
>TCONS_00041426
GCAACCTTGTGGAGGATTCTGAGACATTGTCGCGAAACTTTGAGGTGTTCGCCACAATAATTGGCTATCGAATGGACCAGCATCCGAGCGCCCGGAGCTGCAGCAGTCGCGGAGCTGCGCCGTCCTGCGAGAGCGTCTCCGGCGAGCCCCCCATGAATTTGTACATCCACTCCACCACCGGCACACGCTTCGAGCTCTCCCTTCCCGCAGAAGAGACCGTGGAAGGGCTAAAGCGAAGACTCTCTCAAAGACTGAAAGTACCCAAAGAAAGACTCGCTCTGCTACACAAAGAAACACGCCTGAGTTCAGGAAAACTTCAAGATTTGGGAATAACGGATGGGAGCAAGTTAACACTGGTTCCAACAGTTGAAGCCGGcctaatgTCTCAAGCATCAAGACCTGAGCAGTCAGTAATGCAGGCCCTGGAGAGTTTGACAGAAACACAGGTCAGTGACTTCCTGTCTGGCCGGTCTCCTTTAACCCTGGCTCTGCGAGTAGGCGATCATATGATGTTTGTCCAACTGCAGTTGGCAGCACAGCCCTCAGGCGGCCCACAGTTACAGCATCGGCATCTCATATCTCGTGGGAGTTCAGAGGGCACAACAGGACTGTCTCACGGAGCTTCAGGCTCTGCCTCTGGGATGGCAAGGGTTTCACACAACCCCCACCCACATCACCCACACCAACATCCTCACCATCCAAACACAACGCTTCCATCTAATCCAGCAGCCTTCCCACCTTCCCCCTCTATCCCATCCATTCCTCCCATGTACTCCACCTCAGCCTCAGGGCATTGTAGCCCTCCACCACAACCCTCTCAACTCCCTGGAAGTTTTCTTCACTCTCAACAGCCGTCTTCGGCCTGCGCCCCTTCTCCAAGCAGCCCCAGCCCCGCAGCTTCCTGTCCAGAGGCCAGTTGCTCAGCAAAGACTTCCGGCAACTGTAATACTCCCTTGCGATCTCGCAAACCTGGCGCTATCATCGAAAGTTTTGTGAATCATGCCCCTGGAGTCTTCTCTGGGACATTTTCTGGCACTTTGCATCCCAACTGTCAGGACAGCACCGGACGTCCCAGACGGGATATAGGCACCATCCTTCAAATTTTGAATGACCTTTTGAGTGCCACCCGACATTATCAAGGCATGCCCCCATCGCTTACACAGCTTCGCTATCAGACCCAGTGCACCAGCCCCAACTCACCAGCACCATCACCACCACCCTCACCTCCCCACACCACTGGACTAACAGGCCTGCCTACCACAGTGCCCTCAGAGACCCAACCAACTCTTCACCCACTTGTGCAGTGCCAAAGCCAGATCCGAATGTGCAAACCTCCCGGTGACCGACTCCGTCAGACGGAGAACCGAGCCACACGCTGCAAGGTGGAGCGACTACAGCTGCTCATGCAGCAGAAGCGCCTGCGTAGGAAGGCTCGGCGAGACTCTCGTGCCCCATACCACTGGCTCCCCAACCGCAAGGCCGGGCGCAGCAACAGTAATAGCAGTATGTCAAGCGAAGGCTCCCTGGACCTGGACTTTGAGGACTCTGTGTGGAAGCCAGACGTCAAAGCTGACATGAAATCAGAGTTCATCATGGCCTGA

Function

symbol description
midn Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in several structures, including axis; basal plate midbrain region; lens placode; nervous system; and presumptive diencephalon. Orthologous to human MIDN (midnolin).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2433 Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in several structures, including axis; basal plate midbrain region; lens placode; nervous system; and presumptive diencephalon. Orthologous to human MIDN (midnolin).

Ensembl:

ensembl_id ENSDARG00000018524

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041425 False 4623 mRNA 0.44 7 18725101 18746508
TCONS_00041426 True 1601 mRNA 0.55 8 18727900 18749313

Neighbor

gene id symbol gene type direction distance location
XLOC_021079 BX649276.1 coding downstream 6181 18663099 ~ 18718920 (-)
XLOC_021078 NA coding downstream 65144 18591699 ~ 18659957 (-)
XLOC_021077 NA coding downstream 178452 18542005 ~ 18546649 (-)
XLOC_021076 si:ch211-212d10.2 coding downstream 233288 18488701 ~ 18491813 (-)
XLOC_021075 tssk6 coding downstream 338042 18386253 ~ 18387059 (-)
XLOC_021081 atp5f1d coding upstream 16748 18766061 ~ 18779232 (-)
XLOC_021082 NA coding upstream 73877 18823190 ~ 18832046 (-)
XLOC_021083 NA coding upstream 193203 18942516 ~ 18946594 (-)
XLOC_021084 NA coding upstream 244526 18993839 ~ 18998174 (-)
XLOC_021085 NA coding upstream 257271 19006584 ~ 19011759 (-)
XLOC_021074 NA non-coding downstream 375327 18348078 ~ 18349774 (-)
XLOC_021073 NA non-coding downstream 379912 18343312 ~ 18345189 (-)
XLOC_021087 BX927243.2 non-coding upstream 457008 19206321 ~ 19207487 (-)

Expression


Co-expression Network