XLOC_021081 (atp5f1d)


Basic Information

Item Value
gene id XLOC_021081
gene name atp5f1d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18766061 ~ 18779232 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041427
TCGCGCAAAGCCTGGCGGGAAAGGTTGCCCATGCCCTTGTCCTATCAGCCGCTCACTCTCTGACTGACAGTCTGTGTGGACAGGGAAGCCGAGTCTTGTGCATTGCAGTGCGGTAAGGGTCGGTTTGCTTCTCCGTGGTGAAAATGTTTGCAGCGAGGTTTCTTCTCCGTCGCGCGGCCCCCGCGCTCAGACACGCGCGCTCTTATGCCGACGCGCCCTCCGCTCAGATGTCCTTCACTTTCGCATCACCCACAGAGGTGTTTTTCAAGGAAGCCAGTGTAAAACAGATTGATGTCCCAACACTGACAGGCGCCTTTGGTATCCTCCCAGCCCACGTCCCCACACTGCAGGTGCTCCGGCCCGGTGTGGTCACCGTCTTCAATGACGATGGTTCCTCTAAGAAGTATTTTGTGAGCAGTGGATCAGTCACCGTTAATGCAGACTCTTCAGTGCAGCTGCTGGCGGAGGAGGCCTTCCCACTGGAATCGCTGGATGTCGCAGCAGCGAAAGCGAACCTGGAGAAAGCCCAGTCAGAACTGGTCGGCGCTTCAGACGAGGCGACCCGGGCCGAGGTTCTGATCAGCATAGAGGCGAACGAAGCGATTGTCAAAGCGCTGGAGTAAATGGTCTGTTTGTTGAGAATTCTGTCGGTTTGAAAAGGTCTCCGGCTTTTTCTGTTCCCCACCCCAGTGAAGTCAAACCGCAAGACTTAACTGCTTGCTTTGTACAGTGGatgaaattaacaataaatttatttgaaatacaCACA
>TCONS_00041428
GCAAGTTGTAAAAGAGATCAAGACTCAGGCAGGTATGAAAAAGttactcaaaagtaatgtaactttccaaaaaaagtaactaagttaCGCCAATACttactttttgggggagtaactcgaCATTGTAATGCATTGCTTTctgaagtaactttccccaacactgcttatgatttgtgatccagggtcacataGACTACGTTCCcacatatttgtttaaaaactacatATCCCATCAGCCCAGAGCTCGCGCAAAGCCTGGCGGGAAAGGTTGCCCATGCCCTTGTCCTATCAGCCGCTCACTCTCTGACTGACAGTCTGTGTGGACAGGGAAGCCGAGTCTTGTGCATTGCAGTGCGGTAAGGGTCGGTTTGCTTCTCCGTGGTGAAAATGTTTGCAGCGAGGTTTCTTCTCCGTCGCGCGGCCCCCGCGCTCAGACACGCGCGCTCTTATGCCGACGCGCCCTCCGCTCAGATGTCCTTCACTTTCGCATCACCCACAGAGGTGTTTTTCAAGGAAGCCAGTGTAAAACAGATTGATGTCCCAACACTGACAGGCGCCTTTGGTATCCTCCCAGCCCACGTCCCCACACTGCAGGTGCTCCGGCCCGGTGTGGTCACCGTCTTCAATGACGATGGTTCCTCTAAGAAGTATTTTGTGAGCAGTGGATCAGTCACCGTTAATGCAGACTCTTCAGTGCAGCTGCTGGCGGAGGAGGCCTTCCCACTGGAATCGCTGGATGTCGCAGCAGCGAAAGCGAACCTGGAGAAAGCCCAGTCAGAACTGGTCGGCGCTTCAGACGAGGCGACCCGGGCCGAGGTTCTGATCAGCATAGAGGCGAACGAAGCGATTGTCAAAGCGCTGGAGTAAATGGTCTGTTTGTTG

Function

symbol description
atp5f1d Predicted to enable proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; optic tectum; and retina. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7649 Predicted to enable proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; optic tectum; and retina. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

Ensembl:

ensembl_id ENSDARG00000019404

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041427 False 769 mRNA 0.54 5 18766061 18778988
TCONS_00041428 True 882 mRNA 0.52 4 18768251 18779232

Neighbor

gene id symbol gene type direction distance location
XLOC_021080 midn coding downstream 16748 18725101 ~ 18749313 (-)
XLOC_021079 BX649276.1 coding downstream 47141 18663099 ~ 18718920 (-)
XLOC_021078 NA coding downstream 106104 18591699 ~ 18659957 (-)
XLOC_021077 NA coding downstream 219412 18542005 ~ 18546649 (-)
XLOC_021076 si:ch211-212d10.2 coding downstream 274248 18488701 ~ 18491813 (-)
XLOC_021082 NA coding upstream 43958 18823190 ~ 18832046 (-)
XLOC_021083 NA coding upstream 163284 18942516 ~ 18946594 (-)
XLOC_021084 NA coding upstream 214607 18993839 ~ 18998174 (-)
XLOC_021085 NA coding upstream 227352 19006584 ~ 19011759 (-)
XLOC_021086 polrmt coding upstream 239370 19018602 ~ 19102311 (-)
XLOC_021074 NA non-coding downstream 416287 18348078 ~ 18349774 (-)
XLOC_021073 NA non-coding downstream 420872 18343312 ~ 18345189 (-)
XLOC_021087 BX927243.2 non-coding upstream 427089 19206321 ~ 19207487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_02824217_02832330 ATP5D coding CI01000030 null 2823974 ~ 2833212 (-)