XLOC_021083


Basic Information

Item Value
gene id XLOC_021083
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18942516 ~ 18946594 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042390
TTTAAATTCAGTAGTGGTTTCTCGTTTCCAATCCAACAATGCTGTGAGCTCCGTCACGTAGAGCCGCTCCCTACAAACAAAGCCAACAAATGAGCGAACAGCGCCTCCTTCTGGACACCAAACAACACGACACAGACAAGTCAAAATCAAATAGTTTATTTAAGATTGTGCAAGTCAGTACTGTCTATAGGAGAATCATTTAAGCAACAAGCATTCACTAAAATTCCACACACAACCATGTCATTGTCCTCCATGTTAGATTCTGCAAAAGAACTTGTAACTGATTACGCAAGGAGCAAAATGGCACAGCGTACTAACACTTGGTCCTAAAGGTTAACACAGGAAGCCTGAAAATatgcttgttttattattattcaatggcAAACTGTTAGCTAGACAAAAAAACAGTGGCATTTGACCATCCACGTGGAATAGAGCACTTTAATACGCTGTACTGCACATAAAAGTTAGCTTAAATTATTTGTATGTTATTAAAAACAGCATGTACAATAAAGTGGCTAAACATTAAGGCGTACAGAAAAATAACAAGGAAGCTAAGCTTTGACTGCTGCCAAAGAATCAGAACTGTTGTATTTGTGAACACTTGAAGAACAGTGAAAAAGCCaggaagacaaaaataaaaatcaaataaagagAAACAGTTTATTCCCACATTAAGAGATTTCCACTAAACACACACTTCTACAGCAATACAATCATGCAGTACTTCCCTCCCCACCCTCCCTAAACCCACGTTTAAAAGGTCTGCTTGCAGCACAGTATGGATAGGAATAAAAGTAAAAGGAGACcagttattatcatcatcaagaCATTTTTGTCTTTGTGGTTTGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042390 True 853 lncRNA 0.38 3 18942516 18946594

Neighbor

gene id symbol gene type direction distance location
XLOC_021082 NA coding downstream 110470 18823190 ~ 18832046 (-)
XLOC_021081 atp5f1d coding downstream 163284 18766061 ~ 18779232 (-)
XLOC_021080 midn coding downstream 193203 18725101 ~ 18749313 (-)
XLOC_021079 BX649276.1 coding downstream 223596 18663099 ~ 18718920 (-)
XLOC_021078 NA coding downstream 282559 18591699 ~ 18659957 (-)
XLOC_021084 NA coding upstream 47245 18993839 ~ 18998174 (-)
XLOC_021085 NA coding upstream 59990 19006584 ~ 19011759 (-)
XLOC_021086 polrmt coding upstream 72008 19018602 ~ 19102311 (-)
XLOC_021087 BX927243.2 coding upstream 259727 19206321 ~ 19207487 (-)
XLOC_021088 BX927243.3 coding upstream 268428 19215022 ~ 19216188 (-)
XLOC_021077 NA non-coding downstream 395867 18542005 ~ 18546649 (-)
XLOC_021074 NA non-coding downstream 592742 18348078 ~ 18349774 (-)
XLOC_021089 BX936298.2 non-coding upstream 450632 19397226 ~ 19399935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G151457 NA non-coding NC_056720.1 CM032089.1 10244918 ~ 10249842 (-)