XLOC_021079 (BX649276.1)


Basic Information

Item Value
gene id XLOC_021079
gene name BX649276.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18663099 ~ 18718920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041423
cagcatgctttcactttccaATTCgccatgaaacgcacatttaccggtACAAATGACATTCCCGTTCTCTCTTCAGGGGCATGAGAGAAGGGGGAGTGAGAAAAGGCCACAGAGGACATGAGGGAATCTTGCCACACATTCACGGCAAACTATGGACGAAAAGCATCTGCAGTCATGGATCTTTCTGTGTGGGGGTTGACTATGTTCTGGAGAGGATTTTAGGCCAGCGGATGAAGGTAGAGGGGTAATTTCCAAATGGCTTGGCTCAAAGCATGTCTTTGTCTTCACTGGCTTTCATAACCAGACTAAAAACTACAGCCCGCACAAACATGAAACCTGTGCCAAAAAGAGAGTCCGTGGAGACGGTACATCATAGACGTTACTACTGAATGTGATTTAAGCTTAAAGCTTAGTCATGTAgcctcaaaacacaaacacaaaacaaaatgtgcCATGAATCTGAGCTTTTCACTCTCCATTTTTTCCACTGAAATTTTCCCATTCCTTCTATCATATTGACTAGATCATTTAGCTCTTGCTCTTTTAAAAGTCCACACAgttcattttttacatttgtattctATTATACTGCACATTATACACCCAAATATCAATATCAATTATGTTAAAAGCCTCATGTTTGTGTAGATTTCCCATTAGTAATTTATACTAACATGACTGTTTGAGCTCCTCTATTCATGAGCATGTCCAAGTGCATCTATTCCattaaaaaacaccttaa
>TCONS_00042387
TTATCTCAATGACAGCGGCTGCGCTGCCGAGAAGCATCTGCAGTCATGGATCTTTCTGTGTGGGGGTTGACTATGTTCTGGAGAGGATTTTAGGCCAGCGGATGAAGGTAGAGGGGTAATTTCCAAATGGCTTGGCTCAAAGCATGTCTTTGTCTTCACTGGCTTTCATAACCAGACTAAAAACTACAGCCCGCACAAACATGAAACCTGTGCCAAAAAGAGAGTCCGTGGAGACGGTACATCATAGACGTTACTACTGAATGTGATTTAAGCTTAAAGCTTAGTCATGTAgcctcaaaacacaaacacaaaacaaaatgtgcCATGAATCTGAGCTTTTCACTCTCCATTTTTTCCACTGAAATTTTCCCATTCCTTCTATCATATTGACTAGATCATTTAGCTCTTGCTCTTTTAAAAGTCCACACAgttcattttttacatttgtattctATTATACTGCACATTATACACCCAAAT
>TCONS_00041956
aaaacattgaGCCTCTAAATACATTGTAGtctctaaatataaatgtattgctcTGCtgatttaataacattaatattgttcatttacttGTCATTGGAACCAAGCAATTTTATCatagaaattattaaaatgttagaaaTACCTGTATTGTAAAACGGTATAGCTTCCCTCACAAATGTGTACAGTCGTGGAGAGTTTTTGGCGCGTCTGAGCACCATAGCAACGAATCGCCGTCATCGTTCATTCAGTGTTCAATGGTTAGCATGCGGGCGACTAGCGCGAACACTAGAGCTGCACCTGAATTGATCGCGTACGTACGCTAATTACGCAAGCCGTTGTCGCATTTAAACATCCACAGAAAGCATTCCCCACATTTCtggcataaacaaacacaaattatATGCAACATGTGTTTACAAAATTGTTACCAACGCAGTCGTAATGGAAGTAGGACATCTTGAAATAAGGGGCATGAGAGAAGGGGGAGTGAGAAAAGGCCACAGAGGACATGAGGGAATCTTGCCACACATTCACGGCAAACTATGGACGAAAAGCATCTGCAGTCATGGATCTTTCTGTGTGGGGGTTGACTATGTTCTGGAGAGGATTTTAGGCCAGCGGATGAAGGTAGAGGGGTAATTTCCAAATGGCTTGGCTCAAAGCATGTCTTTGTCTTCACTGGCTTTCATAACCAGACTAAAAACTACAGCCCGCACAAACATGAAACCTGTGCCAAAAAGAGAGTCCGTGGAGACGGTACATCATAGACGTTACTACTGAATGTGATTTAAGCTTAAAGCTTAGTCATGTAgcctcaaaacacaaacacaaaacaaaatgtgcCATGAATCTGAGCTTTTCACTCTCCATTTTTTCCACTGAAATTTTCCCATTCCTTCTATCATATTGACTAGATCATTTAGCTCTTGCTCTTTTAAAAGTCCA
>TCONS_00041424
aaaacattgaGCCTCTAAATACATTGTAGtctctaaatataaatgtattgctcTGCtgatttaataacattaatattgttcatttacttGTCATTGGAACCAAGCAATTTTATCatagaaattattaaaatgttagaaaTACCTGTATTGTAAAACGGTATAGCTTCCCTCACAAATGTGTACAGTCGTGGAGAGTTTTTGGCGCGTCTGAGCACCATAGCAACGAATCGCCGTCATCGTTCATTCAGTGTTCAATGGTTAGCATGCGGGCGACTAGCGCGAACACTAGAGCTGCACCTGAATTGATCGCGTACGTACGCTAATTACGCAAGCCGTTGTCGCATTTAAACATCCACAGAAAGCATTCCCCACATTTCtggcataaacaaacacaaattatATGCAACATGTGTTTACAAAATTGTTACCAACGCAGTCGTAATGGAAGTAGGACATCTTGAAATAAGGGGCATGAGAGAAGGGGGAGTGAGAAAAGGCCACAGAGGACATGAGGGAATCTTGCCACACATTCACGGCAAACTATGGACGAAGTCAGTATTATTCTACTAATAGTGATAGTCAAACATGCAGTCGGTA
>TCONS_00042388
TGCtgatttaataacattaatattgttcatttacttGTCATTGGAACCAAGCAATTTTATCatagaaattattaaaatgttagaaaTACCTGTATTGTAAAACGGTATAGCTTCCCTCACAAATGTGTACAGTCGTGGAGAGTTTTTGGCGCGTCTGAGCACCATAGCAACGAATCGCCGTCATCGTTCATTCAGTGTTCAATGGTTAGCATGCGGGCGACTAGCGCGAACACTAGAGCTGCACCTGAATTGATCGCGTACGTACGCTAATTACGCAAGCCGTTGTCGCATTTAAACATCCACAGAAAGCATTCCCCACATTTCtggcataaacaaacacaaattatATGCAACATGTGTTTACAAAATTGTTACCAACGCAGTCGTAATGGAAGTAGGACATCTTGAAATAAGCTGTTCTGGATGGTTCTCATGCTTTTCCAGCTGTCCATTCACAACATCAGGGTTCACCTTTGACCCTGGTCCACCACCATGGCCAATCAACTGTAGCATGGAACCAGACTTTCTGGTGAAGTAATAGAGATTTCAGATGTTGACTATTCATCAGTGATCATGTATGCTTTGTCGTTGTTAGCCCAGATCTCATGACATTAACTTAACAGTATGTGGTTTGTATAATTAGCGCTGGGACATTTTTTTTTGGTGTCACACCTATGTGGGACGCGTTAAGTGTGGTCTGTCCTCATCTTTCTAGTACAGCGCTTCTCGAGCCCCCTCACGAGTGACCTTTAACAAGCGTGATGACATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041423 False 742 lncRNA 0.40 2 18663099 18706045
TCONS_00042387 False 480 lncRNA 0.40 2 18663232 18690810
TCONS_00041956 False 945 lncRNA 0.41 3 18663287 18718920
TCONS_00041424 False 597 lncRNA 0.40 2 18705840 18718920
TCONS_00042388 True 770 lncRNA 0.42 2 18712978 18718867

Neighbor

gene id symbol gene type direction distance location
XLOC_021078 NA coding downstream 3142 18591699 ~ 18659957 (-)
XLOC_021077 NA coding downstream 116450 18542005 ~ 18546649 (-)
XLOC_021076 si:ch211-212d10.2 coding downstream 171286 18488701 ~ 18491813 (-)
XLOC_021075 tssk6 coding downstream 276040 18386253 ~ 18387059 (-)
XLOC_021074 NA coding downstream 313325 18348078 ~ 18349774 (-)
XLOC_021080 midn coding upstream 6181 18725101 ~ 18749313 (-)
XLOC_021081 atp5f1d coding upstream 47141 18766061 ~ 18779232 (-)
XLOC_021082 NA coding upstream 104270 18823190 ~ 18832046 (-)
XLOC_021083 NA coding upstream 223596 18942516 ~ 18946594 (-)
XLOC_021084 NA coding upstream 274919 18993839 ~ 18998174 (-)
XLOC_021073 NA non-coding downstream 317910 18343312 ~ 18345189 (-)
XLOC_021067 NA non-coding downstream 841651 17818823 ~ 17821448 (-)
XLOC_021085 NA non-coding upstream 287664 19006584 ~ 19011759 (-)
XLOC_021087 BX927243.2 non-coding upstream 487401 19206321 ~ 19207487 (-)

Expression


Co-expression Network