RNA id: TCONS_00041956


Basic Information

Item Value
RNA id TCONS_00041956
length 945
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_021079
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18663099 ~ 18718920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacattgaGCCTCTAAATACATTGTAGtctctaaatataaatgtattgctcTGCtgatttaataacattaatattgttcatttacttGTCATTGGAACCAAGCAATTTTATCatagaaattattaaaatgttagaaaTACCTGTATTGTAAAACGGTATAGCTTCCCTCACAAATGTGTACAGTCGTGGAGAGTTTTTGGCGCGTCTGAGCACCATAGCAACGAATCGCCGTCATCGTTCATTCAGTGTTCAATGGTTAGCATGCGGGCGACTAGCGCGAACACTAGAGCTGCACCTGAATTGATCGCGTACGTACGCTAATTACGCAAGCCGTTGTCGCATTTAAACATCCACAGAAAGCATTCCCCACATTTCtggcataaacaaacacaaattatATGCAACATGTGTTTACAAAATTGTTACCAACGCAGTCGTAATGGAAGTAGGACATCTTGAAATAAGGGGCATGAGAGAAGGGGGAGTGAGAAAAGGCCACAGAGGACATGAGGGAATCTTGCCACACATTCACGGCAAACTATGGACGAAAAGCATCTGCAGTCATGGATCTTTCTGTGTGGGGGTTGACTATGTTCTGGAGAGGATTTTAGGCCAGCGGATGAAGGTAGAGGGGTAATTTCCAAATGGCTTGGCTCAAAGCATGTCTTTGTCTTCACTGGCTTTCATAACCAGACTAAAAACTACAGCCCGCACAAACATGAAACCTGTGCCAAAAAGAGAGTCCGTGGAGACGGTACATCATAGACGTTACTACTGAATGTGATTTAAGCTTAAAGCTTAGTCATGTAgcctcaaaacacaaacacaaaacaaaatgtgcCATGAATCTGAGCTTTTCACTCTCCATTTTTTCCACTGAAATTTTCCCATTCCTTCTATCATATTGACTAGATCATTTAGCTCTTGCTCTTTTAAAAGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042385 lncRNA downstream 3330 18591699 ~ 18659957 (-) False XLOC_021078
TCONS_00042386 lncRNA downstream 3330 18646734 ~ 18659957 (-) True XLOC_021078
TCONS_00041954 lncRNA downstream 116961 18542005 ~ 18546326 (-) False XLOC_021077
TCONS_00041955 lncRNA downstream 116961 18544057 ~ 18546326 (-) False XLOC_021077
TCONS_00042384 lncRNA downstream 313513 18348078 ~ 18349774 (-) True XLOC_021074
TCONS_00042389 lncRNA upstream 104270 18823190 ~ 18832046 (-) True XLOC_021082
TCONS_00042390 lncRNA upstream 223596 18942516 ~ 18946594 (-) True XLOC_021083
TCONS_00042391 lncRNA upstream 274919 18993839 ~ 18998174 (-) True XLOC_021084
TCONS_00042392 lncRNA upstream 287664 19006584 ~ 19011759 (-) True XLOC_021085
TCONS_00042393 lncRNA upstream 879125 19598045 ~ 19602462 (-) True XLOC_021093
TCONS_00041422 mRNA downstream 116638 18544509 ~ 18546649 (-) True XLOC_021077
TCONS_00041420 mRNA downstream 117043 18543193 ~ 18546244 (-) False XLOC_021077
TCONS_00041419 mRNA downstream 117046 18543193 ~ 18546241 (-) False XLOC_021077
TCONS_00041421 mRNA downstream 118586 18543955 ~ 18544701 (-) False XLOC_021077
TCONS_00041417 mRNA downstream 171474 18488701 ~ 18491813 (-) True XLOC_021076
TCONS_00041425 mRNA upstream 6181 18725101 ~ 18746508 (-) False XLOC_021080
TCONS_00041426 mRNA upstream 8980 18727900 ~ 18749313 (-) True XLOC_021080
TCONS_00041427 mRNA upstream 47141 18766061 ~ 18778988 (-) False XLOC_021081
TCONS_00041428 mRNA upstream 49331 18768251 ~ 18779232 (-) True XLOC_021081
TCONS_00041429 mRNA upstream 299682 19018602 ~ 19102311 (-) False XLOC_021086
TCONS_00041418 other downstream 117013 18542010 ~ 18546274 (-) False XLOC_021077
TCONS_00041393 other downstream 1067967 17589608 ~ 17595320 (-) False XLOC_021063
TCONS_00041375 other downstream 1237491 17425678 ~ 17425796 (-) True XLOC_021054
TCONS_00041374 other downstream 1407022 17253745 ~ 17256265 (-) True XLOC_021053
TCONS_00041358 other downstream 2254869 16406924 ~ 16408418 (-) False XLOC_021043
TCONS_00041431 other upstream 487401 19206321 ~ 19207487 (-) False XLOC_021087
TCONS_00041432 other upstream 487534 19206454 ~ 19207459 (-) True XLOC_021087
TCONS_00041433 other upstream 496102 19215022 ~ 19216188 (-) False XLOC_021088
TCONS_00041434 other upstream 496235 19215155 ~ 19216160 (-) True XLOC_021088
TCONS_00041435 other upstream 678306 19397226 ~ 19399935 (-) False XLOC_021089

Expression Profile

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