XLOC_021093


Basic Information

Item Value
gene id XLOC_021093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19598045 ~ 19602462 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042393
CAAAGCAAGACTTTGACTAAAGACTTGCAGCTTGGGAGGAGGAAACCAAAACAAAGAAGGAGGGAAAGAAAAAACAACGCATATAAACTGGCCCCTCGTTGGCATGGGTTTTCAAAACAGAAATGCATGACTGGCCGTCAGAGGCACCCCAGGGAGGCAGCAGGCACGGTCCGCTGCTGCTTAAAGACTTGGCCATGGAGCCAGAGACACATCTGGTCTGTTTGAGCTGTGCAGATGCTACTTGGAACCATCTCCATCCCAATGAAGCGTCTGAAAGAATACGGCACATGTTATAATGGGCTCTTTTTCTTCAAATGGTCTCATCGTCAGAGCATTTGGATCGAGATGAGGCACATTCAGCTGGAATATAATCTGGAACGAATTGAGCAAATTGTGATTCTTACTGGCGATTCTCAAGTTCCCAGCATCTTTCATGTAAACTGGCTGAAAAATTGTGAAAGGCCAAAGTTCTCAGCGTATACATGGCACAGAGCCAATATGTGTCCAGTGACAAATTATAAGGCATTGTGTTCCCTGATCTGAGGCCAGTTAATAACTGCAAGAATTCCCATGCTAGCCTGAGCTAATCTATGTTGGCTATTAGTGTCTAATAGCATGGCTAAGTTAAATCTTGCTAAtagattatctatcta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042393 True 653 lncRNA 0.44 2 19598045 19602462

Neighbor

gene id symbol gene type direction distance location
XLOC_021092 micos13 coding downstream 45242 19547476 ~ 19552803 (-)
XLOC_021091 si:dkey-78l4.11 coding downstream 92733 19504185 ~ 19505312 (-)
XLOC_021090 BX936298.1 coding downstream 168121 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 coding downstream 198110 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 coding downstream 381857 19215022 ~ 19216188 (-)
XLOC_021094 NA coding upstream 20278 19622740 ~ 19638029 (-)
XLOC_021095 celf5a coding upstream 63155 19665617 ~ 20011604 (-)
XLOC_021096 rxfp3.2b coding upstream 502244 20104706 ~ 20105969 (-)
XLOC_021097 creb3l3a coding upstream 510253 20112715 ~ 20126230 (-)
XLOC_021098 btbd2a coding upstream 556605 20159067 ~ 20166664 (-)
XLOC_021087 BX927243.2 non-coding downstream 390558 19206321 ~ 19207487 (-)
XLOC_021085 NA non-coding downstream 586286 19006584 ~ 19011759 (-)
XLOC_021106 BX088720.1 non-coding upstream 887979 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 919742 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 1516440 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 1517434 21119896 ~ 21121096 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03229393_03232355 NA coding CI01000030 null 3229281 ~ 3232454 (+)